Chr:
Chr10
Start:
10445624
End:
10449023
Strand:
-
Ref_name:
LOC107279029
Sequence
(XR_001540443.2):
UAUUGCACUCAAACUAGAAAAUAUCCCUUUUGGAAAUUAUAUCCAAAUAUAAUUUCCUUUCAAAAUUCCCUAUUCAAAUUCCCUCCAAAUACAAAUCCUAUUCCAUUAGAAAUUCACAAAUAAUUCUUUAUGGGCCGAGAUCUUCUUUUCUCUCUUUCGGCCCUCCUCUCUCUAGUGGCCCAGCUAGCCCAGGAGGCAACCGCCUCUCUCCUCCUCUUCCAGGUGCGCACGCCGCCGCCAACACCUUCCGUCGCCGCUAAGAAAUCGGUGUCGUCGCUCUCUCCUCCUCCGCCGCUGCCGUGCCUUGCCCUCCUCCACCGCCGCCGCCAGCUUGCCUUCGACACCAAGCAACCGUUGCCGACGUCAUCCGCCACCUCACACCGCCGACGUUAGCUCCUGGAGCGAACCGCCAUCAUCGACCAAUCAACAGACAAGGCCGACGCCGUGAUCGUCUUUUCCACGCCGCCGUCGCCAUGUCCUCCUUCUCCUCCUCUGCGAACCGACUUGAGCAACCGACCUCUGCCGCCUAUAAAUACCUGCGAGCCGUCCCUUUCUCCCCCACACAUCAUCAGAGCCUCGAGCUCUUCCUCUCUCUCCUGCCAUGUCCGGCCGCCGCCUACCGUCGGCCGAUCUCCUUCACCAUAGUUUCACAACCCAAACCCUCGCGCCAUCGGCUUUGCCUCGGCGAGAUGAAUCCGUUUUUCUCCUUUCCCUUCUCCUUUAGCCACCACCACAAGCCAUCACCGCCACCAUCCAUGCCGGCCAUGGUUGAGCUCCUGCCGUCGCCGUUCCGGCCAUCUCACUCUCCACCUUAGCUAGCUACCACCCUCCCUGGAUGCGCGUCGCUCAGGAACAUGUUUUGCCGCCGACGUCGCAGCCUCUCGACCACCGGAGCACCAGCGCCCCUUUCUCCCUCUCUUCUCCCUUCUCUCGGCUCUCUGUGAAGCAGGAGGAAGAACAAGACGAGAAGAAGAAGAGAAAGAAGAGAAAAGGGAAUAGACACUGACAGAGUUAAUUUGGAGUCUUGCCGAAGCCGGGAGUUCAAUCAUAUAAGUUAGUCUCAUCCUAACUUAAUUCUCAAGUAUAGAUUAGAUAGAUGGUUUAAGUCUAUAGCAAAACACUAGAGUUGUGUCAUCGUAUAGCUUCUGCUGUAAUAGUUAGCCAAAAGUUUGUAAAUACCCUAUUAUUUUAUGUAAAGGAAUCUCCUUUAAAACCUUGAUCAAAUGUAUGCAAUGAAGAUCCAGAUUGUUGAACCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
90.24%
ME_num:
MEP:
8.13%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.93
Avg Expression:
1.96
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 5.22796326488561 | 1.28673254995361e-17 |
| 2 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.08154244867676 | 0.00649534205166497 |