Chr:
Chr10
Start:
3068460
End:
3071148
Strand:
+
Ref_name:
LOC107279002
Sequence
(XR_001540369.2):
GGGCCAAAUUUUCGUUUCCCUGCGCGCGCUUAGUAAUCUCCGGUCUUUAUCUCUCAUCCCCUUCCGGACAAACCCUAGACUUCUCUCACCUCCUCCGCUCUCGCAUCUCGCCCUCGCAAAAUCAGGCGUGCGCCGCCGCUCGCUCUCCCCCGGCUCCCCCUCGCCCGCGUACGCCCGCUCUCCCAUCGCCGUGUCUCCACUCUCCAUUCGGGCUCCCUCGUCCAUCUAGCUAUUGGCGCUGCCCUCCCUCUUGUGUCAUCAGGCGCCAGCGCCGGCGCCGCCGCACUCCAUUCCCAUAGCCAGCCGCCGGAGCUGGUGUCUCCUCCAUCCUCCUGGUCGGUCUAACCGCCACGACAUUGGAGGGGAAUGGGGGUUGUCAGAUCCGGCUGUUCCCUACCUUGGGGCGACUGGAUCCGUCCAGCGCCGCAUGGUCCUCCUGCAGAUCCCCAUUUUCAGUGAUAAACGGGUGCGAGGGCCACACGUCCAGGGGUGGGCAGGCUUGUUGUACUUCCCCUUUGCGGCGGUACUCAUUCUCGCUGACCCUCGCAUCUCCUCAAUAUACAAGCUUUACAGAUUCCUCAUACUGGAUAGUGUCCUUAACCUUGGUGGAUAUGGGGCUGUAGCAUAUGAUUAGGUCUGAACUGCUAAGGGUGGUGCUACUGCCUCUGGUUUUUCCUUAGUUCAAUUUUAUCACCUCUUAAUCAAGUGAUUUAUGUGAAGCCAAAAAGGACUUGCCACCCUUAGGAUCGUCAAUGUACAAAUUCUUUCUUAGCUUUUUUUUUUUUAAUUCACAAUCCUCUGUUAAAAUGCUGAGGAGAAUGGUCAAUUGGUCAUGUACAUGAUGAAUGAAUGAAUGAAAUGAAUCAGACAUUUGAGGGUGGUUGUCAUUGUGAAUGUCAUUAGCUAUUGAAAUUGGUAUGCUCAUGUAAACAGGUGUAAUGGACAAUAAUGUGAAAUAGUUUUCUUUUUAAUGGUA
Sequence
(XR_001540370.2):
CUGGGGCCAAAUUUUCGUUUCCCUGCGCGCGCUUAGUAAUCUCCGGUCUUUAUCUCUCAUCCCCUUCCGGACAAACCCUAGACUUCUCUCACCUCCUCCGCUCUCGCAUCUCGCCCUCGCAAAAUCAGGCGUGCGCCGCCGCUCGCUCUCCCCCGGCUCCCCCUCGCCCGCGUACGCCCGCUCUCCCAUCGCCGUGUCUCCACUCUCCAUUCGGGCUCCCUCGUCCAUCUAGCUAUUGGCGCUGCCCUCCCUCUUGUGUCAUCAGGCGCCAGCGCCGGCGCCGCCGCACUCCAUUCCCAUAGCCAGCCGCCGGAGCUGGUGUCUCCUCCAUCCUCCUGGUCGGUCUAACCGCCACGACAUUGGAGGGGAAUGGGGGUUGUCAGAUCCGGCUGUUCCCUACCUUGGGGCGACUGGAUCCGUCCAGCGCCGCAUGGUCCUCCUGCAGAUCCCCAUUUUCAGUGAUAAACGGGUGCGAGGGCCACACGUCCAGGGGUGGGCAGGCUUGUUGUACUUCCCCUUUGCGGCGGUACUCAUUCUCGCUGACCCUCGCAUCUCCUCAAUAUACAAGCUUUACAGAAGUGAUGGUGGCAAACGCAUUUGGAUAAGAUAAAUCUUAAUUUGGGCUAUGAUGGAGUGAGUGGUCUCUGUUGUUUAGCUAUGUUUUAGCUGCUUAAUGUUCUGUGACAAAAUACUUUAUGUUAAGUUCCUGUAUUGCAAUUUAGACGGUCUUGUCUUAAGGGGGCAUAAUAAUCUUUAGUUCCUGUAUGAUGAGGUGAUCUAAUCAUCUAAGGCUUCCUGCUGCAAUAUUGAAUAGUAGUGUAAAGGACAUUGAAUGUGGGCAGGUUAGUAUUUUUGAAUCUUCUAGUAUGUAUUCACAUUUUUAUUGCACUACUAGGCCACCUCAGUUUAUAGAUUUUAGUAAAUUAGCAAUAUACACAAUGAAAAGAAAACUGUUGUGUUAAGGAAAUUCUUUAUUUGCCAUCCAGAAUGAAAAGAACAUGAGGUUCAGUGCAUCCAGUUAAUGUGUUGCCCCUUUGUUUUUUAAGAUCAAACUAGUAUUUCACAGCUGAGUUUAAAGAGGGAAUAAAUUCUGAUUUACUCGGUAUACAUACGCUAUUUUGUUUGGCCAACCUGUGCUGCUUUUUACCCAUGCAUGCUGUUCUAGUUGCGGCAUCUGCUAUGCUCUGAUUAACUGGCACAGCUACUCUGGUAUGAUUAGCUAUUUUGGACUUUGGUUAGGAUUGGAGGCUGUGCUGUUUGGCUAUUGGUUUUGCAAACCAUGACUAUUAGAGGGCAGCAAACAUCUGAUUAUACACUAAUUGCUUUUGUAUUUCCUUUUCUUUAAUCUUAUCUUAACAUGCACUGUUCAAGAACUAAUGCAUGUACCUCACUUGUUUUCAGAUUCCUCAUACUGGAUAGUGUCCUUAACCUUGGUGGAUAUGGGGCUGUAGCAUAUGAUUAGGUCUGAACUGCUAAGGGUGGUGCUACUGCCUCUGGUUUUUCCUUAGUUCAAUUUUAUCACCUCUUAAUCAAGUGAUUUAUGUGAAGCCAAAAAGGACUUGCCACCCUUAGGAUCGUCAAUGUACAAAUUCUUUCUUAGCUUUUUUUUUUUUAAUUCACAAUCCUCUGUUAAAAUGCUGAGGAGAAUGGUCAAUUGGUCAUGUACAUGAUGAAUGAAUGAAUGAAAUGAAUCAGACAUUUGAGGGUGGUUGUCAUUGUGAAUGUCAUUAGCUAUUGAAAUUGGUAUGCUCAUGUAAACAGGUGUAAUGGACAAUAAUGUGAAAUAGUUUUCUUUUUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
33.54%
ME_num:
MEP:
57.32%
HE_num:
HEP:
8.94%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.84
Avg Expression:
15.00
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h | -1.43919294803694 | 0.00166092897753804 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.33290603001726 | 0.0498894860803268 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.81865455111855 | 0.0123595973981142 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.09724604417814 | 0.0420710003792862 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 3.80747773486271 | 8.78375265332454e-50 |
| 6 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.84036533556719 | 2.47107448117283e-20 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.60215413476891 | 0.0269643925039833 |
| 8 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.32537817855438 | 0.00376997282976537 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.88804951619163 | 0.0144683593357718 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.71517427204635 | 0.0123200232556381 |