Chr:
Chr10
Start:
12765148
End:
12767843
Strand:
+
Ref_name:
LOC107279000
Sequence
(XR_001540362.2):
CCCCCAGCCCAACUACCUAUUUCCCCAAUCCCCACCCCCAAAUCCCUAACAGCCAUUGGGGCGACCCCGUGCGGCGGCGCAAGAGGCGAGCAGCGAGGGGGUCGGCGGCACGGCGGCACCGGCGAGGUGGACCGGCAAGCAGCAUGUGGAAGCGUGUGGCGGCAGCUUGCACGACCUCGUGAGCAGCGGAGCACGCGGCGGUGAGUCCGCACGAGCAUCAAAAGGAGCAGCAGCAGGCCACACCGCCACGGGAGCUUGCGGAGGCAGCGGAGCAGCUGAGCAAGAGCAGCCCGCAGCCUGCAGCCCAUAGGCGAGCAGCAGUAGGCCGGCGGCUGCAAAACAACUAAACAAAAAAAAGACUGAAUCGCAGCAUGUCGAAAAGAACAUUGUUCAACUAUUAUUCGAGUGGCAGCAGCAGUACCCCUACUGCAGAGGAUGAUGAGAACAUAAGGCAACAAAAAAUGGCAAGGGUAGAGUAUGUCGGUGUUUCCAGUAUGUUGACACUCCCCCCCCCCCCAAAAAAAAAAAAAAAAUUCAUUCUUGGAUCCGCCCCUGUGGGGGAGCGCGCGAGAGAAUUCGUGAAAAUGUUCACACACUCUCUCUCUCUCUCUCUCUCUCUCUCUCCCUGCCUACUGCUACUGCCACGGGCCACGGCGCAGAAAGCGGCAAAAAGGCUACGCGCAUACAGCAGAGGUCUCGUGGUUUUGCCCGAGCUAGGGCAUGGUGUUGUACGGUUUGACGACGUACACACAUAACAUGCACCGUGCUAUGCGCAUACGGGGGUGGCCGGUUAGUCCGAUUCGGUACGUGCCUAUGUGAGAGAAACGACGCGUGAUUUUGCCCACUCGUAACAGUGACACGACGCAAUGCAGGCGAUCGUUGUCUUGUGGAUUGUUUCCAUGUUGCAAUGAGCGCUAGAAUUGCAGGCAUAUAUCCUUCGUUUGUUAUCACUAAUUAAAACCUUAUGAGUGUGUCAUGACGAAACAACGUUCCAAUGAGUUGAAUCUGUGGAUAAUUAAUGCAGCAAAAUGUCUCUACAUGGUGUGUUUUCGUUGGUGCCACUUAGGCACUUUUUGGUUUUGAUUUUUGAUCGCACCCAAAUUUUGUAGAGCUCCUAGUAGACAUUUUCUUUUGACACUAGGAAUUAGAUUGCAUGUUUGAAAUUAUUUUUUCCCAAAGAAAAUAACUAAGGCUAGGAUCCUACUAUUACCUGUUUUAUGCUUGCCAUCCAUGCGAUUAAGCAGCAGCGCUGUAAUACAGGAUUAAUUGAGGCCGUAUGAUCUGUUUCAGUAAUCUGUAGCCAUCAUAGGCACCCACGCCUCUCAUCACAGGAGCGCAUGGAAGCGGUGGUUGGUUUGUGGUCUGUGAGCUAGUACAAUGGUUAUAAUCUUUUUUGCUUCCUUUUGGUUUAUCUCCUCCCGAUUUUUAUUUGGGUUAAUUGGAUCCAUGCCACCGCAAAUGUGGUAAAUCAAAAAAAUGCCACCACUAUUCGUCAUAUCGCAGGCGUGCCACUACUAUUGUGUCUAAAUUGGAUAUGUGCCACAAUAUACCACACGCGUGUGCUUUUCCAGAGUUUAAGCAUACCGUAUUUUCAUAUGGACCAAAAUGCCCCCGUGUCGCUGGGUUGUAAGCCAUCGUGGUCUGGCUCGACGAGCUCGCCAUCCAUUCCCUACCUCACACCAAAACCCUAGAUCUCGAAGGCGGCGACGAUGGCGUCCGCGAUGAUUGUCAGCGCGACCUCGCUAUCCAUUCCCAACCUCACACCGAAACCCUAGAAUCUUGAAGGCGGCAUCGGAGGCGGUUGCGCAGGCGACGGCGACGACGACGACUGCCGACACGAGGAUGGAUUCACCGAGGCAAAAGCAGGACACACAGGCAAGCGGCAGUGUUGUUCGUCGACCGGGGGGAUUAGCUCCUUCCAUCCCCACAUUGAAGUGCGCUUGCGAUGUCCCCGCCGCGGCGCUCAUUUUGAACACCCCGAGGAAUCCUCGACGGUGAUGGCUCCAGUGCGGCAAAUCGGGUUUAUGCUACUUAUGGAUUUGAGAAGACCUACUGAAUGAGCACGCUGAAUAAAUGGUAGCAUACUGCCAGGCCGGUGUGCAAGAUUAUCUGGGUGAAAGAAUCGACAUGCUUCAGCAACAGUUAACUGAGGCUCAACAUGAGGCUCAACAUCAAAAUUGCAAGUUGUCUGAGCUGGUUGAUUUUGUAGGACAAUGAACUGAAGUUGAUGAAGAAACAUUUGGAAGAAGAAAAGAUUACCCGUUCCAGAUUACUUUAUCUUGUGUUAGUGAUGUCCCUUGUAAUAGUUAGCUUAGUUAUUUGUUCAAAUUAGCUAAGUUGAGAUGUAUUGUAAAGAAGUCAGCUUCUGGUACUUCAAUGAAGCCCCUGCUCCCCUAUUUUGUAUGUAAUGAAGCAUAAUCUGUGAUCAAAUGUUGUGUGGCAGAAAUGUUGAGUAUUUUGGCAAUGAAAAGUGAUGCAGAAAUGUUGAGUAUUUUAA
Sequence
(XR_001540363.2):
CCCCCAGCCCAACUACCUAUUUCCCCAAUCCCCACCCCCAAAUCCCUAACAGCCAUUGGGGCGACCCCGUGCGGCGGCGCAAGAGGCGAGCAGCGAGGGGGUCGGCGGCACGGCGGCACCGGCGAGGUGGACCGGCAAGCAGCAUGUGGAAGCGUGUGGCGGCAGCUUGCACGACCUCGUGAGCAGCGGAGCACGCGGCGGUGAGUCCGCACGAGCAUCAAAAGGAGCAGCAGCAGGCCACACCGCCACGGGAGCUUGCGGAGGCAGCGGAGCAGCUGAGCAAGAGCAGCCCGCAGCCUGCAGCCCAUAGGCGAGCAGCAGUAGGCCGGCGGCUGCAAAACAACUAAACAAAAAAAAGACUGAAUCGCAGCAUGUCGAAAAGAACAUUGUUCAACUAUUAUUCGAGUGGCAGCAGCAGUACCCCUACUGCAGAGGAUGAUGAGAACAUAAGGCAACAAAAAAUGGCAAGGGUAGAGUAUGUCGGUGUUUCCAGUAUGUUGACACUCCCCCCCCCCCCAAAAAAAAAAAAAAAAUUCAUUCUUGGAUCCGCCCCUGUGGGGGAGCGCGCGAGAGAAUUCGUGAAAAUGUUCACACACUCUCUCUCUCUCUCUCUCUCUCUCUCUCCCUGCCUACUGCUACUGCCACGGGCCACGGCGCAGAAAGCGGCAAAAAGGCUACGCGCAUACAGCAGAGGUCUCGUGGUUUUGCCCGAGCUAGGGCAUGGUGUUGUACGGUUUGACGACGUACACACAUAACAUGCACCGUGCUAUGCGCAUACGGGGGUGGCCGGUUAGUCCGAUUCGGUACGUGCCUAUGUGAGAGAAACGACGCGUGAUUUUGCCCACUCGUAACAGUGACACGACGCAAUGCAGGCGAUCGUUGUCUUGUGGAUUGUUUCCAUGUUGCAAUGAGCGCUAGAAUUGCAGGCAUAUAUCCUUCGUUUGUUAUCACUAAUUAAAACCUUAUGAGUGUGUCAUGACGAAACAACGUUCCAAUGAGUUGAAUCUGUGGAUAAUUAAUGCAGCAAAAUGUCUCUACAUGGUGUGUUUUCGUUGGUGCCACUUAGGCACUUUUUGGUUUUGAUUUUUGAUCGCACCCAAAUUUUGUAGAGCUCCUAGUAGACAUUUUCUUUUGACACUAGGAAUUAGAUUGCAUGUUUGAAAUUAUUUUUUCCCAAAGAAAAUAACUAAGGCUAGGAUCCUACUAUUACCUGUUUUAUGCUUGCCAUCCAUGCGAUUAAGCAGCAGCGCUGUAAUACAGGAUUAAUUGAGGCCGUAUGAUCUGUUUCAGUAAUCUGUAGCCAUCAUAGGCACCCACGCCUCUCAUCACAGGAGCGCAUGGAAGCGGUGGUUGGUUUGUGGUCUGUGAGCUAGUACAAUGGUUAUAAUCUUUUUUGCUUCCUUUUGGUUUAUCUCCUCCCGAUUUUUAUUUGGGUUAAUUGGAUCCAUGCCACCGCAAAUGUGGUAAAUCAAAAAAAUGCCACCACUAUUCGUCAUAUCGCAGGCGUGCCACUACUAUUGUGUCUAAAUUGGAUAUGUGCCACAAUAUACCACACGCGUGUGCUUUUCCAGAGUUUAAGCAUACCGUAUUUUCAUAUGGACCAAAAUGCCCCCGUGUCGCUGGGUUGUAAGCCAUCGUGGUCUGGCUCGACGAGCUCGCCAUCCAUUCCCUACCUCACACCAAAACCCUAGAUCUCGAAGGCGGCGACGAUGGCGUCCGCGAUGAUUGUCAGCGCGACCUCGCUAUCCAUUCCCAACCUCACACCGAAACCCUAGAAUCUUGAAGGCGGCAUCGGAGGCGGUUGCGCAGGCGACGGCGACGACGACGACUGCCGACACGAGGAUGGAUUCACCGAGGCAAAAGCAGGACACACAGGCAAGCGGCAGUGUUGUUCGUCGACCGGGGGGAUUAGCUCCUUCCAUCCCCACAUUGAAGUGCGCUUGCGAUGUCCCCGCCGCGGCGCUCAUUUUGAACACCCCGAGGAAUCCUCGACGGUGAUGGCUCCAGUGCGGCAAAUCGAAGGGUUUAUGCUACUUAUGGAUUUGAGAAGACCUACUGAAUGAGCACGCUGAAUAAAUGGUAGCAUACUGCCAGGCCGGUGUGCAAGAUUAUCUGGGUGAAAGAAUCGACAUGCUUCAGCAACAGUUAACUGAGGCUCAACAUGAGGCUCAACAUCAAAAUUGCAAGUUGUCUGAGCUGGUUGAUUUUGUAGGACAAUGAACUGAAGUUGAUGAAGAAACAUUUGGAAGAAGAAAAGAUUACCCGUUCCAGAUUACUUUAUCUUGUGUUAGUGAUGUCCCUUGUAAUAGUUAGCUUAGUUAUUUGUUCAAAUUAGCUAAGUUGAGAUGUAUUGUAAAGAAGUCAGCUUCUGGUACUUCAAUGAAGCCCCUGCUCCCCUAUUUUGUAUGUAAUGAAGCAUAAUCUGUGAUCAAAUGUUGUGUGGCAGAAAUGUUGAGUAUUUUGGCAAUGAAAAGUGAUGCAGAAAUGUUGAGUAUUUUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
22.76%
ME_num:
MEP:
64.63%
HE_num:
HEP:
12.4%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.76
Avg Expression:
5.99
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.20267944745566 | 0.00106446223128525 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.07618973863498 | 0.0444394072632876 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.36167562753705 | 0.00424871550001389 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.14422245014906 | 0.00379987859046305 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.72166081649902 | 0.00111229715286486 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.21550579596923 | 0.00611491117987023 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.00637136169129 | 0.0146681650945656 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.41306809283769 | 0.000785328023623869 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.29022728342658 | 0.00350492772632558 |
| 10 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.0522806829004 | 6.89707008861544e-09 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.39262364793018 | 9.11904421642123e-05 |
| 12 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.05234965814741 | 7.33356498324693e-09 |
| 13 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.05245996788102 | 6.9597891078328e-09 |
| 14 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.11118735382076 | 1.31983956316592e-05 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.72954987809467 | 0.000122252042310041 |