Chr:
Chr10
Start:
12798983
End:
12803963
Strand:
-
Ref_name:
LOC107278997
Sequence
(XR_001540350.2):
AUCACAUAAGGGGGCCCAUACGGCCGUACGUUCCAUGUGCCUUGUUCCCGGGUGCGCCGCCGUCUCUCAGAGUCGGAGGCGCCGAGUACUCAAACGCGCCGCAGUUUCCGACCUCGCAACCAAGCCUCCACCACAUCCCACGGACCGAUCCCCCUCUUGCCCCCCACCGCCCGACGCGGCGGCGCCGCCUCUUCGCCCUCGGCUCCGGCGACCGCCGCUGCUACCUCGCCGUCGGGUGCCUCAUGCCUCGCCGUAUGAUUGAUGGUUUGUGAUGCAAUACAACCAUCUGGAUUCAUCGCGGGCAUAAUUCUGCAGUGGUUGCUGUUCAGUUCUUCAGAAAAAGAAAAUAUGGGCAGAUAUGCCUCAAACAAAGUGAAGAAAACCAAGAGAUCCAUGGACCUGUCGUACGGUUCGUCAAUUCAAUCAGGUUCUUUCAUCAUCGGCAAAACAGAGGACAAUAACUGGCAAGAAAGCUAAACAGCAUAGUAAACCGAACUACUAGUCCGGUACAAAUUGAGUGCAAGAAGCAACCAAGGUUUUGAUUCAUAUCACUGUCAAACACUAUAUUUCCGCCUAUAGUGUAUGUAUGGCUAGAGUUCCAUAAAUGACUGGUUGAAUUGACGAACCGUACAACAGGUCCAUAGUGUACGGAAAAUAUAGUGUACACUAUAUUUCCUGAUUGAAUUGACGAACCGUACAACAGGUUCCAUGGACACUAUAUUUUCUGUACUAGGAAGAGUCCCUAGUACAGAAUCGAAUGAGCUCAGGAAGAGAACUAGGGACUCUUCCUGAGACAUCAAUUACAUCAAAUGUGAUUUUGAUAUGCAGCAGCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
6.5%
ME_num:
MEP:
59.55%
HE_num:
HEP:
33.74%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.84
Avg Expression:
33.12
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.70083285218328 | 4.75137242467309e-16 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.09144047675975 | 7.3711836126166e-22 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.37052848307159 | 1.94272732006046e-12 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.4599434081344 | 7.12744361077807e-10 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.33867814948264 | 4.91025546533388e-10 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.43086163985073 | 1.41040184417465e-11 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.47185191450401 | 0.000686204549261694 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.3938551245293 | 1.54976192157166e-13 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.64176902999918 | 5.43261471586879e-05 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.37559751389156 | 3.44614194744539e-13 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.11921510300242 | 2.74902045748824e-10 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.00969396587628 | 0.0280023097777332 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.02716504184164 | 7.61266130655318e-08 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.8650783225923 | 5.28543790951706e-08 |