Chr:
Chr10
Start:
18190832
End:
18192771
Strand:
-
Ref_name:
LOC107278989
Sequence
(XR_001540308.2):
UUCUCUUCUCUCCUUCUCGAUCUCUCCUCUCGUUUUCUCCUCACGCGCGACUGAGAGAGAGGGAGCGAGGGCGGCGAUGGGGAGGCGGCCUGGCUAGGGCGCUAGGCGACGGGGCGGCGCGGCCGUGGGCGACGGUGUCCGGCGGCGCCCGGAGGGAAGGCGACAUGGCGGCUGGGCGGCGGGGAAGUGGGGAGGGCCGGCGGCCAAGAGGCGGCGUGUGGCGGCGGCCUAGCGCAGUGGGGGAGGAGGGGCCGGCGGCUGGGUGACGGCGGCGGCCUGGCACGGUUGGCCGGUGGUGAGGGAGGGAGGGAAGGCCGGCGGUGGGGAGAUGGAGACCGGCAGCGGUGGGGAUGGUUGAGAGGGCGGCAGCGGUGGGUAAUGGAGAGGAGACCGAGGAAGAAGCUCGGCGGCGGGGCGGGAGGAUGUCGGGGUCGGCGCGCGCUACGGAGGCGGCGUCGGCCGGACUCGUGAAUGGUGGGCGCGACGAUGAUGCCGCGCGUAUGGCGCGGCUGACAGCGCGGCCACUCGGCGGCGUCCUGGGCGAGGCCAAGACGUCGGUGGGGCAGCGGCCGGGCGUGUAGGCGCAGGCGACGGCCUGGCGACGGCGCGGCCGGGCGCGUCGGAUGGGGGACGGUGCGCGGACCGGCUACGCGUCGGCCACGCAAGGAGGUGGCGACGGAGCGCACGAUGGUGGCACCGCGCCGGGACAGCGACAAGCGAAUGGAAAAACAGAGAGAAGGCGAUCGACAACACUAAGGGACGACAAUGGGAAGGAGGGCAAGGAAGGGAAGGAGCAGAUGCUCACACUGCGGCAGCCGAGUAGCGGCACACCGUGCGUGGUCGACGGGCGUCGACGAUCGGCUCGCGGAUCAUCCUAGGCUUGCUGUUCGUCCUCGCACACCACGUGUUCGAUCGUCGGUAACAAGCGAACACACAGUGUUAGGGGAUAAAUGUCAGCGGGUUAGUGCAAGGUAAGAGUUAGGGAGUUAGAAGUUAGCGAAACGGAAAGUGGAAGAGUCAGUGAAACAGAAAGUAAAGGGUUAGCUGGUUAGUGAGUCUAAGGGUUAGAUGUUAAAGUUAGUCGUUCUCGGGUGAUCAAUGGUGCGGCGGCCUAUCCGUCCUCUUGCUCAACUGAGGCCCAGCCGGAGCCGGCCGCGGCGGAGCAAAUGGAGGGAUGGCAGCUUGUGCACGGGACUGAGGAGCGCAGUGGCAGAGCUCGAGCGUGGAGGUGGAGAAGAAAUGGAGAGGAGCCGAGCUGCUGCUGUCUUUGGUGGGGUUCAUAUAGGUUUGCUGGCUGCCUGUGUAUGGGAGGCAAUGUGAGGGUAGGCGGGGAGCAGCUCUGAAUGUCGACAUCGCCACAGUACCAGGCAAUUCAUCGAACAGCUUCUGUGCAGGCAGCUGGUUCGGCUGGGGAGGGAAAACAGACUUUGGCUGAGAAGGUUGCUUGGUGGCUGUAGCUCUGAGGUUAGGGAGGCAAAACAGACUUUCUGUGAGAUGAGCUGGGCUGACAGGGAAGGGAGGUGGCCUGGUUGCAAUAGGAACUUUUGCAUAUUGCAGGGAUUGAAUUGGAAUGACAUAUGUAUUAAUGGAACUUGUAAUUUGGACUGUAUUUAUAUUUUGGAAUGUAUAAUCUGGACAUUUAUUUGGCUCUGUAUAUCGGACUGUGCUUGUAUGGUACUAUGGAGUGUAUGGUUGUGUUCGGUAUAGAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
7.72%
ME_num:
MEP:
21.34%
HE_num:
HEP:
70.73%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.77
Avg Expression:
37.20
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.75775165359493 | 7.86060296244692e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.68255452743813 | 0.000169267961201004 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.19941730961055 | 9.39650022703222e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.65755445304963 | 0.000684492942201214 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.48633893221145 | 5.91177263590914e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.97201052259186 | 0.00429668694975847 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | -1.73584666082068 | 0.0104588019416803 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.68519910646148 | 0.0122123457146869 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.65249922565483 | 1.22131640579924e-06 |
| 10 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.70525440125899 | 0.000131223135172942 |
| 11 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 4_days_after_shift | 1.23206823220333 | 0.000628873744315312 |
| 12 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -3.18369991996971 | 3.58503888657823e-13 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.23199986278343 | 1.69463286299817e-08 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -2.97605642307491 | 4.28678796997898e-05 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.43285839276161 | 0.0220166931560591 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.40199579468789 | 4.21208497076889e-06 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.14435177875337 | 1.1972222512889e-07 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.10444890523039 | 6.54024048108029e-06 |
| 19 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 1.49743456940374 | 0.0207268928973365 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.29955071830001 | 2.06506421839462e-05 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.29077066358804 | 3.97276845716263e-06 |
| 22 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN | -1.58498635021159 | 0.0316296022763712 |