Chr:
Chr10
Start:
3926400
End:
3927269
Strand:
-
Ref_name:
LOC107278976
Sequence
(XR_001540235.2):
AUCUCUCCUCUCUUCGUCUCUCUCCUCUGCUCUCUCCAGGCGACGGAGAGGCAGCGGCGGCCGGCGGCCGGCGGCCGGCGGGAGAGAAGGGAGCGGCGCGCAGCGGCGGAGGCACGGCUCCGGCGGUUGUGGGCAGAAGAGGAAUCGGCGGCGGGAAGUGGCUCUGGCUGCGGCGGCCGCGGUCGCUGCACAUGCUCGACCCCUUCGCGGCCGCUGCCGCGCCCGCCGCUGCCGAGGCUCCGUCCGGGGAGGCCGCCAUCGCCGCUGUCGGAGCGGCGGCGGAGGAGGCAACCCCGACGCUGAUCGACGCCUCAGCAAGCUCAACAACCACCUUGAUAAGAUGCUGAAAGACAUGGAGGAAUCAUGGCUGGGGCCAUGGAAAUGCCUUCUCUUGGGAUACGAAUGUACGAUUUAACUGACCAACACAUUGAGGCAGCUCUGACAAACCUGAUUGCUGGUCUGGAAUCAGAAUACAAAUUUGAAGUAAAUCCAGUGCUCAUCAAGGUCAUCCUUGGUGGUGCUAUGUCAGUGGAUGAAGUGCAGGACUGUGUUUCUCAACUUAUAUCGUGUAAAGGCUAUUUUGGCCGAGGAGGGUGUUGUGGGAAAGACAGACUUAGAGCCUUCUCUUCUUGCUGUAUUGAGUCUGAAGCUCUGGAGACAGUCGAAUGCUUAAUAAAAAGUACAGUGAAUGAGCUGAGUGAACCAGUUGAUAGAGAUCCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
28.86%
ME_num:
MEP:
65.04%
HE_num:
HEP:
5.89%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.70
Avg Expression:
3.56
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 6.35024454634118 | 0.00362075837812257 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.4054485825957 | 0.000240247327324002 |
| 3 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 5.36381759027422 | 0.0187853189165066 |
| 4 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.57857894891123 | 0.000901687163613443 |
| 5 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.61965895705882 | 0.0256233197296463 |