Chr:
Chr9
Start:
21161940
End:
21163753
Strand:
+
Ref_name:
LOC107278966
Sequence
(XR_001540179.2):
CAACGUCCCAGAUCAGCGCGCGUCCCACACCUCCCUCUCUGCCGCAAUCACCGCACAUCCGCGCGACCGCGCGCCUCCCGAUCCGAUCCGAUCCAGAUCGGAUCGCCUCCCCUCCACCCGGAUCCCUCGCCUCCGCGUCGCCGGUCUGCAUUCGCGCCGCCCCCGGUCAGCCCGCGUCGCCGGUCCCCAUCAUCGGCGGCGCCCGACGAGUUUAACCCUUGCGCGGCUCUGCUGGAGUGCGAGUACAAGAACGACGCCGCAGCCGAGAACACGCUGCUCUACUCGGCGGCGUCGGUGGGGGACAUGGCGUUCGUGCAGGAGUUCAUGGACAGGGACCCCUUGCUGGUGUUUGGCGAGGGCGAGUACGGCGUGACGGACAUGUUCUACGCCGCCGCGAGGGGCGGGAACGCCGAGGUGUUCGGGCUGCUGCUGGACCACGCCAUGUCGCCGACGUGCUCGACGAAUUGUCCCAACGGGGAAGGCGCAGCAGCGGUGGUGGCUGCUCCUCGGUGUUCUGGCUGGAAAUGAUGGGCAGGGCAGUCCACGCCGCCGCGAGGGGCGGCAGCGUGGAGAUGCUGAGGGAGCUCAUCGAGCGUCGCUCCGACGUGUCAGAGCAUCUCGACUUCCGUGGAUCCACCGUGCUGCAUGCUGUUGCAGGUAGAGGGCAGCUAGAGGUGACGAAGCAACCCAGCGCUUCCGACUGAGAUGGUUGUGGGACGACUGGUAGCGCCCAGCGGUUGAGUUCUUGGGCGAAGCGGCAAAAUGGCUCGCGAAGGCCAGCGGCAGCUGGAGAUUGACGAUGAAGAAGCGGUCGGUGGAAUUUCUCUUCUCCAUAGCCAUUUAGCCUCUCCUUUCAAGAUAACUCUGUACGCUUGAUGCCCCUCUAAUAAUAGCUUAGGAUUUUUUGAGGCAUCGAUAGCUGCAAUCAGUGCUCAUGUCAUCAUUCAAUGACCUGUAACAAUUUUGAAAGAACUAUGUUGGGCACCAGAUGAACCCAGGCAGAUGUUCUUUGGAUCGGUUUUUGUACACCACAAGGUUCUAUCUGCAGGAAAUUUAACAAAAAAUAAACUGGCCAACUAUAUUCGCUAUGCAAUGGAGUUUAUGGUGAAAGCUCAGUUGCUUUUUGUUCCAUAUAAUAUCCUUGAAUUGUAGUCUGAAACCAACUUCUUAAUAUAAUGGGCAGAGCUCCAACCUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
19.72%
ME_num:
MEP:
37.8%
HE_num:
HEP:
42.28%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.81
Avg Expression:
26.34
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.74709798062366 | 5.45721998181999e-05 |
| 2 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.74552384019855 | 0.000802019063952423 |
| 3 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.74562734514346 | 0.000812278823787924 |
| 4 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.7454333983388 | 0.000818209883046247 |
| 5 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.06223383382653 | 3.4149301059017e-05 |