Chr:
Chr9
Start:
7251864
End:
7255039
Strand:
-
Ref_name:
LOC107278955
Sequence
(XR_003238532.1):
GUAAAUAAGUCCUCUAUUUAUUUUAAGGAUUGCAAUGAUUCAUAUUUGUCACCGUGGGUACCAGCGCUGUGUCCUGGGACUGGUACUGAGAUCGCGGUUUCGUAGGAAGCGGUUUGCGCCGUUUUCCCUAUGACAUGCUCCUGUCAGGUGCCGUUGUACGGCGGUACCAGAUUGGGGUGUGACACAUUGAUGGCUGAAAAAUUUGUCAUAUCAUCUAGUGGGCUAUGGUAUGUAGUUGUAGCUUUUUGCUCCUUGGGCAGGCCAAAAUUUGCAUGCACAGACAGCUUGUUGUCCUCUCUGUUGGAAAUUUGUUCAUAAUUCGGUAUAUUUUAAUCCAAAAUAUUAAGACAAUAAACAUGACAUUUAUAAUUUGAGUAGAUCUAGUGACAGUGCUAGAUGUGUACAACAUGAGCGUACUUAAUAUAAAAUAAGCACCAACAUAGAUAAGGCAACGCCCAAUAACAUUGCGACUGACAGUAGUAGAAAAUUAAGAACGAACGGUAAUAGUAAAUUAUUAUACCCCGAGAAUGGCCCUCCGCUGGAGUUUGAGGUAGUAUUGCCUCCGUUGGUGUUGAUGGGUGCCUCCUUCUCCUUGUCUCCAGUGUUAUUGUUGUCGCUGAUAUUCGACAUAUUGGCGAAGACGAUGCAGAGGAAGACGAACAAAAGCAGUCACGCAUAGCGCUCCCUAAAAACUUGAUCGCCCACCUACCCGUGCAGGUUCUCAAGCAGACGGAGUUCCGGAGGCACCUGCUUGUUCCGAUCACCCGUGCGUGCGGGAUGAACAGAACCGGGGAAAUGGAGAGACAACGCAGGAACAUAAGGAGAGUAUCGCCUAGGAACAGCAGCAGGAGGAAGACUCGAUCUUUGAGAGCCUCUGCCUUGCAUUAUAUAUAGAGAGAGAUCUCCAUUACCACACAAAUAAAUCUCAUUUGUUGUGAAGAUUACCACAAAAUAAAUCUCAUUUGUUGCGAAGAUUACCACACAAUGAAUCUCUCAUUUGUUGUGGAGGUUACAACAAAUAAAUCUCUCAUUUGUUGUGGAUGUUACAACACAAUGAAUCUCUCAUUUGUUGUGGAGGUUACAACAAAUAAAUCUCUCAUUUGCUUUGGAGGUUACAACACAAUGAAUUUGAUUUGUUAAUAGUGACUUUAUUCUCGUCUGUUACAAAAUGAAAGAGCAACAAGCAGGCUCGGCUCGGCCGGCCGUCUCGCCUCGCCACGCCCACAGCCGAGGCCAACUUGGCACGCGCGCGUGUGUGGAAGUCCAACCAUCACCUCAACCGGUCAAUAGGGAAUCUCCAAUAUCACCCUAUUUAAGUUGAGGUUCUUCCACCUAAAUUUUCAAGGCAGUAUUAUUGUCUCUAACAUUACUUGUGGGCUCUUGAGAUUUUAAUUGAAUUAAAUUGGGCCUACCCCAUUUAUUCCAAGACUCUCACCAUUCAUCUUGAACAUCUAGAACCCUAAUCGUUGUGCGCAAGCAAGAGUCUAGCACAAUUGCAACAACUUCAUCUAGUCUUGGAGGUUGGGAAACAAAUCCUCUAUUGUAGAGCUAAUACUGCACAGGUGCUGUAGCGAUCAAAUCAAGCCAUCCGAUUAGAUUAAGCGGCUCUGAUUCUGUCCUUAAACACCGAAAAUAUUUUUGAUAAUUUGGAAACUAACAAACUGAUUUUAAGGAGGAAAAGUCAAGAUAACCUUGAUGGAGGGAAAAUCACGAAUCCUCCAGAGUACUUGGCGCCAAAAUAAUACAGGUUCUCCUUUUGCUUUCUUCCUCCUUGGGACUUGGUGCCAAAAGGAGAUACAGAGGUUUCACUUUGCCUUGUUCUGUCCAGAAACUUUGAUGAUCAAAUAAAGUAAGCCAUCAGUCUCCAACGAACAGGUAUGUAUGCCAUGUCUUGUACCCUUUUUGUGAUCAUGUCCUCACAAAAAAAACCAAAAGCAUUGUUGUGGGAUUCUUAUGAUUGGAGUGGAUACACUCUACACUCGUGUAGUGCUAAACAGAGUAUACAUACAAAUCUGAGGCCUUAUGGCGAACGACUCAAACUCCAACCAUCAUAAUUCAAAUAGCACAAAUAUGAUUCCUAGUUGGAUUCCUCAAUUUGGCGUGAAAUUUAAAUCUACAAAAGAGGCAUGGGAAUUUUGGACUUAUUAUGGAGGUCAUACUGGUUUUGAUGUUAGGAUAAAUUAUGAAAAUAAGAGUAAAGUUGAUGGAGUAAUUACUUCUGCAAGAUAUGUUUGUUCCAAUGAGGGAUACCGGGCAAUAGACAAAAGAGAUCACAACACCAAGCGUCCUCGUGCUGAAACAAGAACAGGUUGCAAAGCUCGGAUCGGAAUCACAGUAGAUAGAGAAGUGGGCGAUUAUUCAGUAUAUGAUUUAGUUCUUGAACAUAACCAUGAACUUUAAUUGCCUUCAACAUGCCAUUUGAUGCCAUCACAAAGAAAGAUAUCGUCAUUGCAAGCAUUUGAAAUUGAAACAAUGGAUGAUUCGGGCAUUGGACCAAAAGCUGCACAUGAGCUUGCUAGUCGGCAAGUUGGUGGUUCAGUAAACCUUGGUUAUACACGUCGUGGUCUCAAGAACCAUUUACAAACCAAGCGUCAAAGGGAGUUGAUGUAUGGCGAAGCCGGAAGUAUGUUGAAGUACUUUCAGGACAAAGUUGCAGAGAACACUUCAUUUCAUUAUGCCCUUCAGUUGGAUUGUGAAGAACAAAUAACAAAUAUUUUUUGGGCUGAUGCUAAGAUGAUAAUCGACUAUGCUCAGUUUGGAGAUGUUGUUACUUUUGACACAACAUUUGGGACAAACAAAGAAUACAGGUCCUUUGGUGUCUUUGUUGGAUUCAACCAUUUUAGAGAGAGUCAUUUUUGGAGCCGCUCUUUUGUAUGAUGAAACAUAGGGUGAUGGCAUGGAGCAUAACAUAUUUGAUACUACCUGGAAUUUUGGGUUCAAUGCAAAUUUGGAUGGGAGAUAGCUAGAUGCCUAGGUAUCAAAUUGAGAUUAACAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
92.89%
ME_num:
MEP:
6.71%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.94
Avg Expression:
1.45
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.46369312031713 | 0.0431259394073056 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.06427315220077 | 0.0414477725249399 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.18193818087471 | 0.00153639381168065 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.13716963021341 | 0.00439646497948778 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.06635907758956 | 0.0432115131391564 |
| 6 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.63364629002886 | 0.0206368853309027 |