Chr:
Chr9
Start:
7239837
End:
7244569
Strand:
-
Ref_name:
LOC107278954
Sequence
(XR_001540064.2):
AGGGAGCCGACAUAACCUUCAGCACAUCCUUCACUGAUGACAUCGAGCUUAUCGCCGCCUUCAGGAUCUCCCUCGAGCAUCCGGGCUUCACAAUGUUCCUCACCUGGGAUAUCAGUUUGACAAGCUUCAACUACAGGUCAACUGGAGAAGGAUGGAUAACUGGCUUUCCAGUAGGAACAGCUCCAGGACUGCGUGAGUGCCUCUUCACACUCAUCAUUGCCUGUUGUGAUUGGCAAAUGUUUCUGCAAGCUGAGCAGCAUCUGAAUUGGAGGUCACCCCUGAAGACAAGAUAACAUCAAGAAUUACACAAGUCCUUAAGGCAGAGAAUGUUUUUGAAAUAAGCAAAUUUGCUGGUAUAACCUAUUAGUACCUCCAAUGAUGACGAGGCCAUCCAAGUCAAGAUCACAGCAUGUUGACAUUGCAGCAUUCACUUGCUCAGUUGUGUGGAUUUGAUCAACAGUUCUGCCGAGAAAAUCAAAACCACCUUCAAGAAGGUAAAGACUUUCUUGUUAUAUAGGCCAUAAUAUAUUUAGAAAGCUAGCAAUCAAGAUCAAUAAAUUUAAACCUUGGUUUCUAUAUGCUGAAAGAACAUCAUCUGUGAUCUCCAAUGUCUGAUUUGCAAAUAGGCCUUCUGUGCCACCUAUUUAGAAAUACAAAGUUCUUCAUGAGACUUAUUUUUAUCAUAUCUUUUUGCAGGAAAUCAAUAUAUAUAUACUAAGCCAAUAAAUGUCACAACAAGCAAUCCAAUAAUGUAAAUAUCACACUGCUUCUUGUUAGUCCAUUUAAAAUCUAGAAAUUGAAAGUAUGCUCAAUUACUCACCAAUAAAUCCAAGCAAAACACUUUGUAGAUUUUGAGUUUUCAUAGCAUCAUAGAUGCCCCAUAUCACAUUGUGCCCCCCUGGCGAUUGCCUCCCAGAGAACACCACACCAACCCUAGAUUCAAGUAAAUAUCAAGCCUGAGAAUUGUGUGUUGAUAGAUCAAAUAUCAAGUUUUCAAUGAUAAAGAAUUGACACUAGUUGCUAUCACACUAAUUCGGUGUUCAAGCCAAACUUGAUUUGUUCUGAUUUUUUUUCUCAACUGAAAAAUGGAUGGGGUUUAGCACCAUUCUGAAAAAGGAAAACGAACCUGAUUGGUGGAUGUUCAUCGUUGGCUUGCGCAUCCAUCUUGUUCGGCUUCAGGAAAUGUACCAGAGGCUGACCAAAGGUGUUGGGAAAUUCCUGCACAACCAUAUUUGCGCAUGUCGGGUCGAUGGUCGUCGUCGAAUCGCCAAACUCCACUCUGAUGGCCUUUCCCUGAACAUGUUGGUUGAAAAACUUUGAGAGAAUACAAAUACAAGGACCUAAAUACAAAGUGAACAUACUGUGUUCAAAACUUGCAACUUUUCAUAAUUAGUGAUGAAAAAAAGUAGCUUGAUGCAGCUUGCAAGUGGUGAGGAUGAAGGAGAGCUUGCAAACCUCAAGGCAUGGAGGCAGCUCCGGCUGAUACAGAGCCCUCCUCUGCUGCAACCCGGUGAGCUCCCUCGGCUUGCCGAGGUCCGCGUUCAUGGACAUCUCCCUUCUUGCUCUUCUUGCUGCAAAGAAAGUACAAAGUACAAACUUACUUUGCAAUUUGUUCUUGGUGCAGUUUUUUUUUUUUCUCCUUGUGUUCUUGCAGCCCUUUUUGUAGGGAGACAAUGGAAGAAGAAGAAGAAAGUGAGACUUUUUGGUGCUCCUGCAGUUUCUUGGCCCUCUGAUGACACCAACAGAAAUUUGACCCCAGAUUCCAUUGUUGCAUUUGUCUGUGUGUUUGAUGUUCAAGGGUGCAACUGUGUGAAUUGUGAUUGGUCAAGUGGAGUGGCCUUCUAGGUUGCCAGGAUGCAGGUGACCUUUUUAUUUUUAUUUUUUUUAAGAAAAAUAAAAUCAACCUGCCUACACAAAAAAAUAUUUGAUACAUCUGACCAUAAUAAGUAUCACAACAGAAGUACAGAACCCUCUCUUGGGCUUUGUUUGUGAACAUUUAUCGAAAUUCCACACAAUUUUAGAGGAAUUGGUCUAUGUGUUGGACUGUUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
52.03%
ME_num:
MEP:
44.72%
HE_num:
HEP:
3.05%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.88
Avg Expression:
7.08
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.92146075514826 | 5.89739673929715e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.58934285306666 | 5.63059408788443e-11 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.40142296796956 | 1.50830293123007e-16 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -5.98877955481317 | 1.62429372433531e-07 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.43017559242031 | 1.77685023186872e-10 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -6.39654297340255 | 1.09447794150646e-08 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.30335860332756 | 0.000339299095545811 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.14969257250122 | 1.3379514153341e-14 |
| 9 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.49380993461758 | 0.00645603560493909 |
| 10 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -1.6505400173208 | 0.00647569261299207 |
| 11 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.57263914999699 | 0.00296907172077647 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.41312937910852 | 5.81853309698153e-05 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -6.88175512955966 | 8.55909434739799e-11 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.65826100999365 | 6.2398030103026e-13 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.39314443572835 | 1.00242626655281e-13 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.96909276038174 | 8.68984643979448e-21 |