RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC107278952

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

38279150

End:

38281930

Strand:

+

Ref_name:

LOC107278952

Sequence
(XR_003240250.1):

GGGGGCGGGGGCGGUUAGGGCCCCGGGAUUUUUAUCCCCGUUGAUUUGCGGAUGCGGGGACGGGAAAACGGGAGGAGUUCGCUGUCCGGACUCCAGGCCUGGAAGCUUUUGCCCCCGGGAAGGCUCUGGAAGGGCCGAAGGGAGGGAUCGUACGCCUUGCUCUAUCAGUUUUUGAUCGGUUGCCUACAAGCUGGAACAGCAAUGGCGUCUGCUGCUCAUUUGCUUGCUGAUUUCAACAAUUGGCUAUGCUAUGGGAUAUCAAGAACAGCUUUGAUCAAAACACUGUGUGAGUCAGCAUCUGACGAGUUCUGAUAUUGAUAGAGGUGGCUGGGGUCCAUUAGUAUUAGAUUAAUGAUGAGACCUGAGUGUAACACAAGUUCCUUCUAAUCCUUCUCUUGGCAGAUUCUCUUUGAACUGUUGUAUCAAGUAAAGGAAAUUGGAAUGGUUCCUUGUCAACAUUAAAGCUGUCACAACACGAUGCAUGAGUGGAGUGCUACUCAUCUUUUUCUUGUUCAGAGAUUCCUAAGAUAAAAUUUGUUUCAUUAAACUGACAUAGUACAACUUUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

366

LEP:

74.39%

ME_num:

125

MEP:

25.41%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.90

Avg Expression:

1.15

Tip: OSA-LNC107278952 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-1.662475613828690.00800979748227392
2Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256-2.345516936579770.0425188284628713
3Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12-1.731863457070780.0139413588686819
4Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342-2.50381387781760.0055037633018205
5Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae-2.927655431181780.00443786496407429
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-4.822795653222310.0121825089588687