Chr:
Chr9
Start:
5000119
End:
5003271
Strand:
-
Ref_name:
LOC107278947
Sequence
(XR_001540010.2):
GGAAUGGCUGAAGAUUAGCGUGCCACCUCAACCGUCUUUUGCAAAAUAAACCCCAUGCUUUUGAUUAAUUACGCGCCGGUCCUUGCUAUGUCCACCGUCCGAUCUUGAGAUAGGCUCGAUCUGGCCGUCCACGUUCCCCCUUUGGCGGCCCUUCCACACCCGUGGAAUCGUUGGAUCUCUAACGGACGGUGUGGAUUUCGCCAACCCGUCCAAACCCUAGCCGCCCGUCCUCUCCUCCCCCAUGCGCGCCGUCUCGCCCUUCUCCCCCCAUCGCGCCGCAUCCUCGCCCUCCUCCUUCCUCGCGUGCGUCGUCGCCGCCACAACUUCCUCCUCCUCCACUCCCUCAACCAUCUCGCUGUGCCGCCAUCGCUGCCUCCACUCCCUCAACAAGCCAUCUCGCCGUGACACCAUCGCUGCUCCCUCCCCGCCGGAUCUCCCAGUGAGGAGGCUAGGGCCGCCGGGUCCGAUGAUCCCAUUCUCCUUGUCAGCGGAUCCGGCGCCCUAGAGAGGAACGAGAGCCGCCGCCGCCGCCCUUUCUCCUCUUUCAUCCCUGCCACGCCACUGCCUCCCAAGCCCUCUCCGACCAUUUGAUUCAUCGGCCUUGGCCUCCCCCUCCAGUGGAUCCGGUCGCCGGCCGGACGGAGUCAGCAGGCCGCCGCCACACCCUCUUCUCCUCUCCCUCUCCAUGAGCACCUCGCUCAGUGCCAUGAGAAGGGAAGGGAGAGCGUAGGCUCGGCCACGACCGCGACGAAGGCAACCGCGGCUCGGCGACAAUGGUUGCCUGCCUGCCUGGUUGUAUUUUCAUAUUCAGACAGUUUUGGAAGCUGCAAGUACACAUGGCUUACCUCUUGAAUGUACAUCAAAAGAGUUUUUCAUAUGCUGCUGUACUGUGUUCCUCAUUUUCAGUGAUGUAUGCUAUAUGCUCGAAGCACAUUCAUUACAGGUCGCAAAAAGAAAUGGAUAUGGAUUGGGUCCAUCAUGGAAACAGACACAAAUUUCUUUUGAAGGUACAUUUCAAUUUAGUUUGUGCAUCAACUGGUUCAAUGGGAAUGUUUUCCUAGACAUGUCCUAACCAUUACGAUCCAAUGGUAAAGCAAUAUCAUGAGUCAAUCUUUUUAAUAUUCUGUCUUUCAGUUGGUUUGCUUUUACAUGUCUAUGCUCAGAGAGAGAUUAUUUCACUGUUUAGUUCACCGGUCUUUUUUACACAUGUUUUUUUCAUUAAUUGUGAAACCAUACUUUUAAAUCCUAAAAGUUGUGGAGCCGAUCUGUUUCGUCAAACUAUAGUGUAACCUGCUGCUGCUGUGCUCUACAAAGCUCAUUGUUUCCACAUUUUAUAUUAUGCCAGCUACUUACAAAAGGGCCAGAGAAGAAAAAAAUGGGACAUACCUGAAGAAGUAUGCCAUGUAGAACUAUAAGGCUUAUGUUAUUGCAUCCAUACUUUGGUUAAGUGAUCAUGCAUGCUUUCGCUCGUAAACUUUGCCAUGUGGUAGUAGCACUUUGUACUACCUCUGCUUCGAAAAUAGAUAGAACUUCUGGUAGAAAAAUUGGUUUCAUGUGUUUAGAACUGUGAUGCCAGGCUGAAAAUAUUAUCUCUCUAUAUAUAAAUGGUUGAUACUAUACUAUUUUAGCUGUACUAACGUUAUUAAAACUUUCUAUUACCUUUGUCCCAAAAUGUAAUAACUUCUGGCCCUAUAUCUUGAAAGGAAUGUUUAGGUAUACAGCUCAAAAUUGCAAUAUAUUUUAGGACAUAGGUAGUAUACUUUUUUUCAGGUGUACUGAUGUCACUAAUCGCACAUAACGGAGGAUUGUUGUUGACUAGGGCAUCGGCAUGCUACACUUGAGAAAAGGUCAUUUUCUAUCUGUUCAUUUUAGCUUUACAUGCAUUUAAUAGAACCACCAGUUGGCAUGGUCUUCUGUUUGUAGCAUCCAAUAGUCCAGUGUGAUUCUAGCUUAUAGAGAAAAAGGGGUACCAUGAAACCUCUGUAAACUCAUUGUAAUUGACAUGUAAUUUGCCUUUUUUUUUCUAUUUAUUCAAACUUCCUAUACUUUUGAUUUCCUCCUUUAGCCUAGCUAGACACUAUUUUUUUGUGUGUUCCAAUUUUUUUUACAAGGGUCGUUUAUAGGAUAUAGAUGAAAACAUGAACCAAUGUAGGUGAAUAUAGAUACAUAUUAUUCCUUGAACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
84.15%
ME_num:
MEP:
15.24%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
endosprem
Tau :
0.93
Avg Expression:
2.43
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.17750801104689 | 0.00353292155667996 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.1590678096608 | 0.0486471905371332 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.41533993341942 | 0.0216738032802825 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.58261085760487 | 0.0170459170325435 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.99148191127367 | 0.00418541996321916 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.0479282492748 | 0.0230785283728488 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.19322148439614 | 0.0134326467798119 |