Chr:
Chr9
Start:
13266365
End:
13268796
Strand:
+
Ref_name:
LOC107278897
Sequence
(XR_001539814.2):
UCCACUUUGUUUUCACCCCUGGGCGAAACCUCCUGUUGACCCAUCAGAAAACUUCUUUUGUAUCAAGGUCCUUCCACAUCUAGUCUUACUAUUUUUCAUUUGAUCCCCUACAACCCUCCUGUGCGACAACGCAUCUUGCGUCCUCCUCCCUCGUCGGUACGCUGCCUCCACUGCCGAGAGAUCGAGACGGCGCUCGCCGGCUCACGUCUUCCCCAACCCCACCGCCGUCGUGCCCCCACAUCCCCUCUGUCCACAAAUCCCACACCUCCCCGCACGGCGUCGUGUUCCUCCUCCUCCCAAUCUCCACCGCCUCUAAUCGGGGGUUCGUGGCCGUCCAAAUCCGGGCGUCGCACCAACGAGGACAGAUGGAUGGGGACUCACCAGCCAUGAAGUAGAAGAGGCCUGCGGUGGAGAGAGGCAACAACCCGCUGCGCUCUCCCCAAUCUAGUCCCCUGGAGGGCAUGUGCGUUGAGCCGGCGAGGAGCGGGCUGCGGCGGCGGGAGACGCGCGCGGAGGAGGAGAUUGGGAGGGCGGCGGGCCGCGGGAGACGGCGCGGCCGGCGGCCUGCUCAGCGAUUUUUUUUUUUUAGAAUUUGUGAUUGAAGAUCUGAGAUGUGUUUUAUUUGUGUGUGAUGUAUUCAUGUGAUGUAUUUGUGAUGAUUUUUUACAACUUGUGAUGUAAGUUUAUAGAAUUUGUGAUGUAUUUGGAGAUGAUCGAUUUGAGGAUUUGGAUGUAUCUUUUGUUAUGUGAUCUGUUGGAUUUGUGAUCUGUGAUGAUUUAUUUGGGAUGAUUUGGGGAUGGAGUGAAAUCAAUAUUCAAUGUUAAAAACAAUAAAAAAAAGUAACAAUUGGUCAUGGCCUGGCUACAUCUUUAGUUCCGGUUGGUGUCACGCCCUGAAGUUUUCCCCUUCUUUCUUGCUUUAAAAUUUGUUGAAUAAAUCCUUCGAAGAAAUUGUUUAAAUUAACCUAGAGCAAAUUCCUUAAUUAAUAAAUACAAUCAAUAAUUGGAAAUGGCAUUGUGGGAUUUUUCUUGGGUUCCACAUGUCACAAUGUCACAAUACAUUAACAGGAUAUUUAGUGAAAUUUUCAGAGCCCCAUAAAUAUUUUUAAACAAAUUAAAAUCCAUAAACCGCAAUAUUUAAAUGUCGUAGGCUCUCCGAACCUUCUGAGGGAUGAAAUAAAUAGUUCAAGUCAUUAAACAAACAAAAUGAAACAUCCGACGUCUCGAGAGAAGAAUAUUGGAGACAUUGUUGGGCCUUUGACCUUCCAAUAAACUUCAGCCUGACAUGUGCUCGUCAAACCACUCGAAGGAUGUGUUACACAUUCAGGAGACUUGACAAAAAUAACUAAACAUCCGACGCCUCGAGAGAAGAAUAUUGGAGACAUUGUUUGGCCUUUGACCUGCCAAUAAACUUCAGCCUGAGAUGUGCUCGUCAAACCACUCGAAGGAUGUGUUACACAUUCAGGAGACUUGAUAAAAAUAACUAAAGAUCUACAACAUCUAAAAUAUUCUUAACUCAUACUCAUCUAAAUCUAUGUGCACUAGAUUCACACUUUCAUCUUAAGCAUGAAAAUACAUAGCAAAAUACACUUAAGAUGAAAUGAUCUAAAUCACAACUACUUCAUAAUUACAUAGGCCGACAGGCUGAAUAUAGAUAUUAGAACAACAGAAGCUUGACUACCCAAUCCUCAAGCACACCGACUAAGGGUUUACCCUCAUUAAGUUCAAGUCCUAGAAAAAGCAGUCGAUUACCCUCAUCACUCAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
44.11%
ME_num:
MEP:
55.49%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.78
Avg Expression:
2.80
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.27308962034568 | 5.77680093793025e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -5.37703249997579 | 7.09828752132571e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.95367848481255 | 0.00088969767632638 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -6.40176261189126 | 6.59015355520141e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.23795185863275 | 0.00027430305320604 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.1446441547386 | 0.000115912589328284 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.83401228918677 | 3.32027305543864e-07 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.37625728832098 | 0.00627050028976887 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 2.11568999865121 | 0.013241531108932 |
| 10 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 6.45307053414491 | 0.0277129791281284 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.41628661137193 | 9.28188875094844e-07 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.23422883002626 | 5.26144360581607e-08 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 2.149585656278 | 0.000861911473327069 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 1.89700886210213 | 0.0145801302322406 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.91404188794708 | 9.57129552635067e-06 |
| 16 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.24127502138278 | 0.0102541103223678 |
| 17 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.50629746744854 | 0.00351095867673525 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.95785791050454 | 1.39659276824478e-08 |