Chr:
Chr1
Start:
40333626
End:
40334556
Strand:
-
Ref_name:
LOC107278895
Sequence
(XR_001539812.2):
CGCCGUCGAGAAGAUCUGCGGGUACGAGGUGAAUCUUGCCGCUCCUGCACACAGAAAGCGAUGGAUACCAACAGUGAGGCCGACGUCUCAUGAGCCAAAACAUUGUCACUCAACUAUUUGCGUUUCUUGGCAGAAUUCAGAUAUGCAGCGGCGAGUCAAUGCUCUAGUUUAUGAACGAUUCCUCAGGGAAUUGUUGAAAAUGACCUGUCCUAGAUGAUCCAAGAUGCAAGGUCCAAAAACUACGGUGGAUUUUCCAUGAUGACAUGAUAUAUCACACGACUCCAAUUCAGGCUGAUGCAUGCGGCUUGCCAAUUAUGGAGAGCUUUUCUACGGUCCCUCAGAACAAUCUCAAGAACAUAUGGUUUGCAAUUGCAUACCGUGGUGAUUGGCGAAAAGGUUGCCGGGGUUGAGAGGAUCAGGCUGCGGCUUCCGACGCCGCUUGUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
40.45%
ME_num:
MEP:
50.81%
HE_num:
HEP:
8.54%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.89
Avg Expression:
10.55
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.90012341123361 | 0.0351153831843505 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.37785514160114 | 0.00566343786450561 |
| 3 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.53771537992203 | 0.0139380640073313 |
| 4 | 9311 // leaf // control--/--9311 // leaf // salt | 1.79551969770591 | 0.013560340303022 |
| 5 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 4.43794842869092 | 9.36605900950617e-24 |
| 6 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 3.58470774386502 | 0.0211657979633869 |
| 7 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.57385971134058 | 0.00144664848467882 |
| 8 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 4.54942911370722 | 1.11508825898358e-12 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.21959524724311 | 0.00106657865860765 |