RiceNCexp:Browse

OSA-LNC107278892

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr9

Start:

10755178

End:

10760256

Strand:

Ref_name:

LOC107278892

Sequence
(XR_003238496.1):

UUCUUUAAGCAUGUCAUAAAUAUUUUCAUAUUUGCAUAAAAUUUUUGAAUAAAACGAAUGGUUAAACGUUGGUAAAAAACAAUGGCGUCAUACAUUAAAAUACGGAGGGAGUAGAAAAUAAAGUUCUUGAGAUACAAACAUUGGAUGAUUGGUGUAGUCAUUCUUCCCCCUUUUUUGGUUGUAAUGCAGCUAAUAUUGGCAAAGCUUCUGGAUUGGAAUGGAAGUACAUCUUGCUGCCAUCGAGAAAUGGAAUGGUUAGGGGCAAAUUGAAGAUGUUGAAUGCCUCUGCUAUCACUACGCCACGCUAUCCAAAUAGCAUUCCACCAUGAAGAAGAAUGGAACUCCUUGCAUGCGACCAAGAUAUGCUGCAAAUUCGAAAGGAAUGGCUGUAAAGCUUGUGGUGCAAAUGAAUUUUGGCACGCAACUGUUGAUGCUGUUCCUUCUGGGUCUCUCUCUGUUCUUUGUUUGGCUUGUGACUGAAAGCAACCAUUAUCAUCAUGUGAAGCCAUGCAUAACAGCGGGAAUCAGGAAAGAGAAUCCUCCAUGAAAGGUACUAGUACAACUACUACGCAAUGUCCCUACAAGGAAAGGAAAGUCCUCAAAGAUUGGAUCUACAUCUAAUUGUCAAGUUGUCAUACUCCUUGCUGGAGAGGGUCCUACGACUUCUCAAGUGAUGUCUAGCAGAGCAGUACCUUGCCAGCAUGGUACUGAGUCGUUGUUUUGUCCUUCUCCAGCAGGGCGCGAUCUUCUCUGGAAUAGUACUUCUAUGUGGUCUGAUCCGAUGCAAGGUCAUGAAAAUCCCUUAACUUUAGGUCCUGUUCUUUUCCACUUACCGAAUAUGGAUUAUGGCAGGCACGCUUUUCACGCUUCUAUACAAUAUGAUUUUCCUGAAAACUUUCUUCAUCAGAUGAUGGAUAUAAGCCUUGUUCGGUUAAUCUCAAGGCCAAGGGAAUUCGGUGAGGAAUUAUCCCCCUUAACUUCCUCUAAUCACUUCCUUGGAAUUUGGUGAGGAAUUAUCCCCCUUAACUUCCUCUAAUCACUUCCUUUUGGGGAUUAACCGAAUAAGCCCUUAUACGGUUAUAUGCUACUACUUUUAUCCUAAAAUAUAAGUAUUUUUAGUUAUGAAUAUGAAUAAUUGUGUAUUCAAAUUUAUAGCCAAAAGGUGCUAUAUUAUGGGAGGAGUACUAACAGCCUUAUCUUUUCGCUUAUGUUUAUACUUAUCAGCUAAAAUUUAAAUUUUCAACCUUAAAUAUAAAGUUGAUUUUGGGGUUUUUUAUCGUAAUUUAUUUUCAGCCUUUGCUUUUAUAUCGUUAAGAACACGUGUAUAAAAGUUUUAUUCACAAAUUAUUUUUUAAUUGCAAAUAUGCCGUUUCGCUUUUUUUCUCCAAUAUGCCAAAGGACGAGGCUAAGUUGCUAGCCCACCCCUCAGCAUUCAAUGGUUCCAGUUGCAUAUUUUGUCCGUACAGUUGGAAGGAGUAGGUGGAACGGUGGAAAGGGUAUCUUCUUUCUCAGAUUUGUCCGAGUUAUUCCUAUCUGCUAUACUAGUACCUGCACCAUGUGUACCAUGUGCUGUUUUUUUAAAAAACUCCUCGCAGAUCAGAGCAUGACUUCUCGGGAUUGAGACUUGCAUGUGGCCGCUGAGAGGAUGUACAAGAGAAUUCGAUCUGGAUCCUGGCCAGACUGAACUCCAUUGCCAAACUUCUCUGAGGGUGUGUUUUCCUGAAAAAAGCUGAAAAAAGUUGAAAGUAUGCGGAAAGUUGGAAGUUUGAAAAAAAAGUUUAAAGUUUAGGUGUGUAGAAAAGUUUUGAAUGUGAUAUGAUGGAAAGUUGGUAGUUUAGUGUAGUUGAGAGUGAACUAAACACAGCCUGAGUUUUGAUCUGAAUAGCAUCAACGUAUAAAACUCUGCAUCUGGAUUCUGGCAUUCUUAAGGCAAGUCCAAGAAACUUUGUGCGAGCCUGAUGGACGGCUCCCAUGACUGGAGCCUUAUUCCCUUGUUACUUCCUUCAACUCAAAAUAACUUCAUUUUUUUAUCUUAGAUGCUAAAAACAAGAUAGAGGAACCAAAGUACCCUACAUUAAUAAAAAGUAGUAUUCUUAAGUGGGUAGGUGAGAGUAAGCCAGAGGUAUUAAAGGAAUAGGUUUUUGCGGACCGAGAGUGUAUACGAGAGGAUAGAAAUGAACUUAUUUUGGGACAAAUGAUUGAGGCUAAAAGUAAACUUAUUUUGGAUAGUACUCCCUCUAUCCCAUUUGAAGUACAGUUGUGGGUUUCAGUGCUUGACAUUUGACCGUUCAUUUUAUUUGAAAAAUUUUAUGAAAAAAAUUAAAAAUAAGUUACGUAUAAGGUACUAUUCAUGUUUUAUCAUUUAAUAACAAUGAAAAUACUAAUUACAAGAAAUUUUUAAAUGAGAUGGAUGGUCAAACGUUAGACACUGGAACCCACAAAUGGGAUAGAGGAGUAGUAGAUCAGAUAGGGAGCAGAAGUGAACUGACAGUUUUGUCCCUGUUUAGUUUCUCUUUUACGUGUAACCUAAUCUGAUUAUCAGAAAGAUCACAUGGACCAGUGAGGUGAUGUGAUGCAUUGUGCCUGCUGGCUUUCAUUGUCGAUUGGAGAGGGAUCUUGGCAGCAUUCUGGUUGCACUGUGCGCCCCAUAGGCUCUCCGGCCUGUGCUAUCCUGUUGCUGACGCUGAUGUGAGCUUCAAGCAGAUGCAAUGCUAAAAUGCUUGGCUGUGAGAUCUCCAACAAAUUUGUUUUUCGAGAACAUGUAGGAGAUCCACGUACUUUGAUAUCAAAUGAGAUCAAGUUUAGUGGCAACUUGGCAAGAUGUAAAUUUGAUGCUGUGCAAGGGCCUGUAGUCCGUACGUACUAAGAUCACCCAACAUUUUUUAUUAGAGAGAUCCUGCAGAAAUAAAUAGAAAAUUUUACAAUAGCUCCAUAUAUUUUGGUACAAGUUACUUACGAUUAUAAGGGUUUUGACAUGCUACAUAUAACUAUAUGUACUAUAGUUCUAUAAAACCAUACUACUCUAGUAACUAUUUUUUCUUUCAGCUACUGAACUAUGAAAUUCUAAAUAUGAAAUUCUAAACUUGUAUCCGAAAUUUAUGAGGUUAUUAAAUCCAUCAACUAAAUGCCAUACCUACCUAAGUUACUUCCUCCGUUCUCACAUAUGUAAUUUUUAGCUUCAAACUGAACAUAUGAAUUUGGAUAAGGUUUGUCUAGAUUCAUAACCAAAAUUGCUAUAGUUUGGGAUAGAGGGAGUAGAUAUUUUCUAUUGUGCUACAAUAUUAAAUUAAGAGUAAAUUUUACUUUUGGCCAGUUAUUAUUGCCUGAGUUUCAUUUUGGACUAGGUUAUUUCUAAUGUUUUCACUUUGGUCCAGGAUUUCUUACCCUCUAUUGUACAUUGGACCACUUUUUUGUUUGCCACUCCUUGAUUUCAUUAGCAAGCUUAUCAGCAGCACAAUAAACCAAUCAAUAUUCCAUCUAACCAUGAUUUCUUAACUCCUUGAUUUAGCUGGUUGACUUCUACUUUUUUUCCUUUAUUAAAAAAUCAUGUGAGCUUAGAACAAGUCACUCUAUUGAGCUUGCAUGCAGCAGCUACAGCAGCCAGCGAUCAUGAGGCUUGAUUUUGUUAGCUCCUCAAGCUCGGGAACAGAGCAGAGAGAGAAGGGAUCCCAGUGUUAUGCUUGAUCAUCUAUUCAUCCUUAAGAUCCAUGGCGCAGGUGCUUAAUAGAAAAAAUGAGGAAAGAGAAGAGAUGGAGAAGAAGGGUGGUCCAAUUUGAAACUAUUGUAAAUUUAUAUAAUCCAAAGUGAUAAGAUAACUUUACCCCUUGUCCAAAUUGAAAUUUUGGUAAAAAUACCUAGCCCAAAGUGCAAUUAACUCUUAAAUUUAAAUUAGUUAACAGUGUGGGUUUAUAAAACCUUAAGAUCAUAAAAAUCCAAGGAUAUGUUAAUGUGUCAAACUAUUGUGUUUUCUAUAGGAAAAGGAUAAUAUUGUGUACAGUUUUUUUUCCUUAUAGAACUCUUGAAAAGGCUAACGUGACAUGUUGUGGACUUGUGGGUAAAUCUAGAUUUUCUAUGAUUUUUUCUACAGUAAAAUCAAACGGUUGAUAGCUUUGUUUGUAAGAGUUGCGAUAGCCAUCUUUUCUACAACACGAACUCAGGUUCAUUGAAAUUUACUAUGUACUCAUAAAUAAAUUACGAGUUUUUCAGUGAAUGUGACAUCACAUUUUGGUAUUCGUCAACAGUUGUCUGGAUGCACCUAAAUGAAUGGAUGACACAACCCGUCUGUUGCCAAGUUUUUAGGACUAUAGCCAAGUAGAUGGUUGAGGUCCAGUACUCU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

436

LEP:

88.62%

ME_num:

MEP:

11.18%

HE_num:

HEP:

0.0%

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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

embryo

Tau :

0.76

Avg Expression:

0.46

Tip: OSA-LNC107278892 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN	-4.45743131033615	3.74008233038519e-16
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN	-3.61939416010003	2.30195986540474e-16
3	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	-7.16713772590279	4.96473637675439e-11
4	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA	-4.40606116729581	2.18460969989983e-10
5	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN	-8.26800780274307	5.28881864119139e-11
6	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA	-7.47317475846258	3.23538789716061e-09
7	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN	-1.40041454574878	2.78145765960721e-05
8	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA	-4.36578670665676	6.78107871862863e-20
9	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA	-1.25772474381557	0.000133138306229601
10	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	-7.06746014049487	1.88718704523986e-11
11	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN	-5.45770661919524	4.02611774193381e-20
12	Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12	1.15480193559367	0.0456649115216166
13	Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day	2.16659355787051	0.0154522665638779
14	Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae	3.22642268373801	0.00346020033045172
15	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA	-6.29555465418562	7.3900070064527e-12
16	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	-6.60051166713818	3.48521032039807e-17