Chr:
Chr9
Start:
15084647
End:
15088442
Strand:
+
Ref_name:
LOC107278809
Sequence
(XR_001539774.2):
AUCCGGCCGAUUCGGCCGAACGGGGCGGCCCAGGACCGCGCGCGACUCGUGCACCUGAAGUGGUCGCGUGCCCUCACCUCCUCCCAUCCUUUUCUCUCUUUUUUCUCCUCUGUUCUCACCGGUUCACAGUGGCAAACCCUAGCUCUCCUCCCUCAUUCGGCGGCGCAUCAGGCGGGGUGGUUCGGCGGAGCGGGUGGCCGCGCCGGGGACGAGCGGCAAGCGGGGCGGGCGGCAGGUGUCGGCGGCGCGGGUUCUCGCUCUCUAGCGGCGCGGGCGGAGGGAACCGGCGGCGCGGGUGCUCGCCCUCUAGCGGCGCGGGCGGAGGGAACAGGCAGCGCGGGCGAUGACUACAGGUGGCGCGGCGGCGACUCCAGGCAACGCGGCGGCGACUGCAGGCGGCACGGCGGCGAGUCCACGCGGCAGCUGCGGCGGCGAGUAGAAACAAUAUCACUCUCUUUGCAUUCCUCCUCGUUUGAAGGCAAUGGAGGGAAGUGGACAAAGUGAUAAGGGUGGACAUGUUACAUGGACAUCUUCAAUGUCUACCUACAUGCUUGAAUACCUCGAGGAUAUUGUUGCUAGUGGGAACAAAACUUCCUCGGGGUUUAAGCAAGUCCACUUGAAGGCUUGUGCUAAAGCUUUGAAUGAUCACUUCAAUAUUAAUUUGACUUCAGAUCAGAUUACUAAUCACAUUAGGACUUGGAAAAGGAAAUAUUCUAAGAUAGCUGAUCUGAGGAAGUUGAGUGCUGCUCUUUCGGAUGAUGACAAUUUUAUCAUAUCACUUGAUCAUAAACAUUAUGCAGACCACAUCAAGGAUCACAAGGCUGAUGCUGAAUAUCUGAACAAACCUAUUCACAAUUAUAGCAAAAUGCUUGUCAUAUUUGGCAAUAGCUUGGCUACAGGGAAAUAUGCAAAAGGAUCAGGUGAUCCUCUAGCCACUGAAUCUAUUCCCAUUGAUGAUGAUGAAGAAGAAGAGUAAAUUGGUAUUGGAAGUGCUGCAGCAACUGGAUCAGCUAGUAGAGUUCAUGCCCUUAAUGAGGAGAAUGGUGCAUCAUCUUCAGCACCCAAACCCAAGAAAGCAAAGACUGCUGCUGCAAUUGAAGAGAAAGGGCUGAUAGGCGCAUUUAAAUCUGUUGGUGACAAGCUUGCUGGAGCAAUAGUUGAAGCUGGAAAAGAGGCUGCAAAAUCUAAUAAUGAGCUGCCCGAUAACCUGUAUGAGAGUGUGCAUAGCAUUCUAGGGUUUGAAGAUGCACAUCUUACUCAUUAUCAUGCACAUCUAGUUGACAAUCCUCCAACUGCAAGGGUGUUUGUUACCCUUGCAUUUGCUCACAAGGUCACUUGGGUUGCAAGAUAUAUUGCCACCACUUUUAAUGGGUGAACUGUGUUGUGAUGGUUGUGUGAUGCUGUUGGUAGUUGCCCUGUGUUCAACCUUCUUUUGCAUACUCAAACAAUGAACUAUGAGUAUUGUGUGAUGGUAUAUGUUAGAUGGUAAUAGGCCUGCAUUCAACCUUAUUUUGCAUACUCAGACAUUAAACUAUGAGUAUUAAGUGUGAUGGCAUUUGGUAGAUGGUAAAUAGGCUUGUGUUAGCCUACUUUUGUCCCUAAACCAGUCACUUGUAUUGGAUGUAUGGUUGAUGGUAAAAUUCAGAUGUGGUGGUUCCAUUGGAUGAUGGUUAAUUGAUAUAUUUUUGCAUAUUUCAUUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
96.54%
ME_num:
MEP:
2.03%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
endosprem
Tau :
0.99
Avg Expression:
5.79
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -6.06518476120714 | 9.09666749311807e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -5.05905316942387 | 0.00407096791683295 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.30992004214887 | 0.00115293971214382 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -5.47651724803166 | 0.000776001174093644 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.87766167201425 | 0.000122466176166164 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.49968666592732 | 0.00158104717118417 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.53307130116835 | 0.00018471888252437 |