Chr:
Chr9
Start:
3518636
End:
3526792
Strand:
-
Ref_name:
LOC107278797
Sequence
(XR_003238455.1):
GGAGUGGAGCCGGAGCUUCGCUAGAUUUUAUUUUCCGCUGCAGUUUUCUUCAUGCCGUAUAGCAAGUGUUUGCCAAGGUAUCGAUACAUCCAAACUCCAUUGGGAUGCUUGGCCGAGUUGGUGUACGUCACCAUUCCGCUUGCUUUGGUAAGAACUUGGUAAAAAGCUUGAGUGUGUGUGAUAUCGGAGCUUCCACUACCUAGUAGUUGAUAGGAGCGUGCAUAUUCUUGUGUAUGUUUCUUGUUUGCUAUUAACCAUGCCAGGAUUGCGCAAGGGGAUACGAGAUGGUCAUGCUCAACAUCGGCUUCUUCACCAUCGACGAGAGAUGCCAACUUCUCGACAAGAUGCAUAUGAGGUACCUGACUAUAAUUUUGCAUGAGUUGAAUCUAAGUUACCAUUCUACAAUGGUAAAUACGAUUAUGUUGCUUAUAUUGAUUGGGAGCUAGCAGUAGACAAUGAAUUUGAUAAAUAUGAUUUUUCUGAUGCUCAAAUGAUUAAGGCUGCUAGUAAUAAGUUUACCUCUCCUGCUCUCUUUUGGUGGAGUUAUGUGAGUAACAAACCUGAAACUUGGGAUGAAUGCAAAACCUUGAUAAGAAAACAUUUUGUAAGUUCUUAUUACAAAUGUCUUCUUCAUGAGAAAUUAGAACAUCUGAAACACAAGGUGAGAGUACAUUCAUGAAUUCAAAGUUUGCAUUAUCUACAGUGGUCUAAAAGAAUGCAAUGAAAACACAAUGCGUAGAUUUUUCAAAGGGCUUAGUUCUGAAGUUCAGGUUAUGCUUGCUAAUGUGAAAUAUAAUCAUAUUGGACACCUAUUCAUGUUUGCUCGUAGCAUUGAGAGUCAGAUCAUAUCAAAUGCGAGAAAGUAUGAACAAUGUGAUUUAUCUCCUAUUUCUGAAUCUCCUAUAUCCUGAUGCAAUGAUGAUGUGCAAACAUUGGAGGAGCAAUCUUUUGUCUCUCCUGUUACUAACAUUUUGCAGGUAAUUCAUCACAUUCAACAAAAGAGGGAGAAUGGUGUACUUGAGAAGAAAGAGGAUGAAGCACCUGUGGUGUCUGAAGAAAGUUUGCAAGGUAAAUUAAAUGGUACUGAGAUAAAUAAAUGUGAGUAUUCUCAAGCUAAGCUACACAUGUCUAUUUUUCAUGCUAUAGUAGAGCAGCCAUUAGUGGAACCAAUUGCUGAGAUGCCUUUGUCACAAGUUGAUUUACUUGUUGUUCCUUGUGAUAAAGAAGAGUCGUGUGAUAAUGCUUCACUUACAUGUUGUUUCUAGUGUUUCUUUGUGUGCCGAUUUUAAGCAUGUCGUUCACAUUGCUAAUGAAAUAGAGGAACGAGAAUUGACAUCUUCUUUAAAUAAUUCGGGCUAUGUUCAGUUUGAUGAUUUUUGUGAGCUCGAUGAUUUGAAGGAGAAGGGGAGGAUGAUGUGACCAUGGCUACCAUUGAUACAACCAUUGCUCACAUCAUGGAUGAACAAGAUGAUAACAAGAUCAAGUCCUCCAAUUAUUGGAAUCCAAUUCAGCCACCUGCUACUGUAUUGAAUUCAAAUGGCCGCCAAAUGUGCAUACGAGCUCCGUUUUGGGUCCAUGAGUACUUGAUGGAAAGCUCACGUAGUCAUCUUUCCAACGGAUCCAACCUCAUUGCCAAAUUCCUUCUCAGUGGGCUGCUAUUGCAGAAAUAAGGUGCUACGUCACCUAUAAUGGGCCAAAUUGCUUGUAACUUCGUUUGGGACCCGGCCUAAGUGGGGCCCAUGUGGGGUGCGCCCCAAUCAGUUGGAGCACGACCCUAGGGUCCCCUUGGUCAUCCUCCCACCUCCAUAAAUAGCUAGGUACCCCUUCAAGAUUUCUUGGGUUUUGUUUAGAUUAAAGUUUAGCUUUGAUACUUUGCCGUGUAAUCCCGUGAUCGGUUAGAUCGCUGGUUUGCCUGUUACGGAAUCCCAACUUAUCAUUUGUAUUCAAUUCCUAUCUGCAAUUCAGAUUGCUUUUAUCUUGUUCUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
88.82%
ME_num:
MEP:
10.57%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.93
Avg Expression:
0.77
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -7.51329890075706 | 0.00160677753627952 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.59350938291584 | 0.00631412247487934 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | -1.90309484754469 | 0.0266224218283463 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.32254029896555 | 0.0217022768363349 |
| 5 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | -6.97083137635647 | 9.94617390889749e-07 |
| 6 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | -7.26473036837789 | 5.9918359469267e-07 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.96070540772665 | 3.44138714077484e-05 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.78346855900406 | 0.0228032000242784 |