Chr:
Chr9
Start:
2226119
End:
2227194
Strand:
+
Ref_name:
LOC107278784
Sequence
(XR_001539669.2):
UUACCCUCCAAUCCUACAGCCAAAUCACACAGAUAACGCGGUAUCCGGCAUCUCCAUCAUGUUCAAUCCAUCGCUAAUCCUCGCCGCGUUCCCCGCCUCCGCCCUCGCACCCAAAUCCCACGGCAUUCAAUCCAUCGCGCAAUCUCGCCGCCGCGACAAAUCCUCAAAACCGCUGCGCUCACCCCGCCACCGCGCAUCCAUCCAUCCAUCGCCAUGUCGCGCAUCCUCCCCAUCCCUCACCGGUGAGAGAGAGGAAGAAUGUACACGCCCUCUCUCCCGCAUCUCGCGGUCAGCCUCGCGCUCACCACCUGCCCUUGAUUGCCAUGCCAGUCCGGGCUCCAGCGCCACGGCCGGCUUCUGUCACCAGAUCCGCCUCGCCUAAAGCAGCCGACGCCUGAUUCUCUCUUGUGCAACUUCCAUGCUUGUAUGGAUCCAGGCAGGCUUUCAGCCGCCAGCGGCGGCCGCUGGAUGUGGCUUAUCAUCUCUGCCCUCGCUGCUGGAUCGAGGAUGCCGCUCACCACCAUAGCCGUUCAAGCAGGGGAAGCUGGUCACUUCUGUGGUAGCACCGGUAAUCAUCGUGAGGGGAAUUUUCAUGAAGCUCAUCCAUAGGUGGACGAUGGACAGCAAUGCCACGGAAGGCGAAAGAGCACGCCGCGACAAGAAAGCUCAUGAACCAGCAGAUGGACCCUUUUAAUCAGACAUUGCUUUCUUUUAUCAGGUUUUACAGCUUGCUUACACACAUACAGUGCUUGCUUUAACAAGUAGUAUAUGUUUAUCGUGUUUAACCUACAGCUUUACAAGUCCAGGUGUUAGAUUAGUUGAUUCGAAGGUAAUCAUUUAGUUUCUCAGGGAUGGUAAUUUGAAGAUUGUAAAACCUUCUAUAUUUAGGCCUAUUAUAUCAGAGUUAAUAAAAUGGGACUGGAAGAGGGAUUUGUGUUCUAAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
3.66%
ME_num:
MEP:
81.1%
HE_num:
HEP:
15.04%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flower
Tau :
0.57
Avg Expression:
7.28
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.16447943672328 | 2.35983255834779e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.15403017425705 | 1.25348629127493e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.89996926697705 | 0.000219953144357785 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.39715853118529 | 1.98199044962056e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.34050284349254 | 5.78457403821164e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.52422173414449 | 8.48852402673305e-07 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.35112261677279 | 0.0489988973470125 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.80637917726683 | 0.000391704731676901 |
| 9 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 2.11934977031317 | 3.15925135225021e-09 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.64389567101469 | 0.0101747452415331 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.65946096702069 | 1.23344585146107e-09 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.06299365372068 | 2.89127999589461e-05 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.47922614635259 | 0.0136789252871485 |
| 14 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.0848139991485 | 0.0252750617865089 |
| 15 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.64897197970847 | 0.000518564227366259 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.65657880639544 | 0.000479565028860528 |