Chr:
Chr6
Start:
22081871
End:
22084788
Strand:
+
Ref_name:
LOC107278738
Sequence
(XR_001546809.2):
CCCCUUUCUAUUCUUCUCUUCUCCCCGAUCUCUCCCGGCGAGGGAGCGUGUGAGUGGGUGCCGGCGAUGGCGGAGACGGCGAGGUGGAGCACGCGUGCGACGACGAGCGCCGAGCGGCUCCAUCUGCGCCGGCUGGGGGGGUGCGCCCGUGGGCAGCACCAAGCCGUGGUCCGGCGAGCGCCGUGCGGCCCGGACCUCGUCGGCGGGGCCUGGCGCGACCGCGAUGGAUGAGAUGGCGGCGAGGCCACUUCCUGUUGAUUCCCGGUGCGAUGCGAAUCUCACCCCUCUCCACCGAUGGUAUUUGCUGCAUGCGACAUGCCACUACUGUCUCGAGUUUUUGACUCGCUCUAUGACAAAAGAACCAGGAGCAUUGAUCCCAUCCGGGUUUGUUUUGAGAGAUUCCUCUUGUCUUGCAUGGAAGCGACCGUUGUACUUUCACAUUGCAAUGUUAGGCCCUUAAUUCUUGUUGUUGCUGUUACAAAAAAAGAUGAUCAUUGAGUAGGAGUACUUACAAUCCCAAUUACCCAUUUGUAUAUCUAUCAUUAUUCUCUUAACGGUACCUUAUCGUUUGAUGAUGAUAUUAUACACUGGUGUUGACAUCUGUUUGAUGUUCACCUUAACCAAGAGUAGAUUUUUUGGGGUACAUAUAUAGAAGAAUCGUUUAUUUUGUCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.03%
ME_num:
MEP:
33.33%
HE_num:
HEP:
64.43%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_meristematic_zone
Tau :
0.57
Avg Expression:
15.96
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.04232334985064 | 3.65270510425923e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.00773795274484 | 0.0128109560033578 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.84195738425427 | 3.24804726699964e-06 |
| 4 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -1.98076393983482 | 0.040283457654298 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.74268623180028 | 2.79621673680835e-07 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.16814450786618 | 3.50373774347595e-07 |
| 7 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.26020930990971 | 0.00887255981630373 |
| 8 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.42755961754228 | 5.02077752767808e-05 |