Chr:
Chr8
Start:
13064524
End:
13067385
Strand:
-
Ref_name:
LOC107278719
Sequence
(XR_001547864.2):
CCCUUCUCCUCACUCUUUCUCUUCCUCUCUCUCACUCUCUCUCCUCUCCCUCUUUCUAUUCCUCUUCCGGCGACGAGCACGAGUGGGCGGCGUGCGCGUGCCGGCAGCUGGCGGCCGCCGCAUCGUCCCCGUCGCUCGGGCUGCCCCCUCCGCAGCGGCGCUGACCCCGACGACAACGAGGAGGCGCGACCCCGGCAACGACGACGCCGACCCCGACGACGAGUGGGCGGUGACGCGGGCCUCGUCCCGCCCGGAUCCGGCGGCGGCGGGCCUCGUCACACCCGGAUCCGGCGGCGGCGGGCCUCGUCCCGCCCGGAUCCGGAGGCGGGAGUGGGCGGCGGCGGCGCGGCGGAUCCGGCUCGGGCGCGGCGUCGACGACGGUGGCGGGCGGCAGCGGCGAGGUCGGGCACGGCGGAUCCAGAGCGGUUGCGAGCGGUGGCGGCGAGCUCGGACACGACGACGACCUCGGCGACGACGACGGCGGCGGAUCCGGCUCGGGCGCGGCGACAACGACGGCGGCGGGCGGCGGCUAGCUCGGGCGCGACGACGACCUCGGCAACGACGAAGGCGGCGCACGUCGGCGAGGUUGGGCGCGACGGAUCCAGCGCGGUGGCGGGCGGCGGCGGUGAGCUCGGUUUUGCGAAGAAGGGGGAAAAGAAGAGGAUGAGUAUGUAUUGCUAGAGUUGGAUGAUUGUCUUUAUCUGACAUAAAACCAAAUGCUCCAUAUGUGCUCUCUGUAAGUUGGUCCUCCAUUUUUUUAAUCAGUGGCUUAAUGGUACGGAUGGGCACGCUUUGAGUGUACAAAAUCUGUUUCUCUGAAUGUUUUUAAUCAGUGGCUUAAUGGUACGGAUGGGCACGCUUUGAGUGUACAAAAUCUGUUUCUCUGAAUGUUAGAUUUUAGUUGUGCAUGUAGUUCCCAGAAGUAGCUCUAAGAUUUCCUUUGUAGCAGAACGACCAACAUUAAAAAUGCCAUAUGCGCAUAGAAAUGUAGCAGUGAGCUCUGUGCUGAUUAUCUAGGAGAGCUCUUGCCAUCAGCAUUUAAAAUCGCCUAAUAGAAUUACAGAAGGACAAAGACAUAUAUGUUUCAUUUAUUUUGAAAAUAGGAACUGAACUUAAGCUCAGUUGGUUGACUUGAACUUGGAUGCCUAUUUCUUGUCUAUAAAUUGAUACUGAGAUUCUCCUUGUCAUCCAUCACCUUUUUUAUAUAUAUUUUGAGCAGCCUUUGUUGCUACAAAGUGCUACCAGUGUGUGUUAUGUGGUAGCUUUGGGGAGAAAAUAUAUAGUCUACCAUGUGAUGUGAGAAAAUGGUAUGCCAGCACAUAUUCUGCUUAUUAAUCUUUUUAAUGCCAUGAUUUAUGGACGUGAAAAUAACAAAGUUAAGUUUUUCUCCCACAUCCUUUGAUCACUGAGACGUUGGCUCAUAUCUAUUUCAAAAAGUUUGUUCACUGUCUUUAUCUCAUACUGAACACUACUGAGUUUUUCUUGUCAUGUUUUCCAGGGUAUCUGAUUCCUUCUGGUCGUCCUCGUCUUGAUCCAGAUCAAGCGUGAUCCCAAUCUGCGCGCUUACUUUCUUGGCUUGGAUUGAUUGAUUGAAAAUGUGUGUUUCUCAGGCCGCCUCCUGUUAUUAGGUUGAAUCUGAGAUGAACUAUUAUUUAAAUUCUGUUGUAUUCUGGUUGUAUCUAUUAUUAGUUGAAUCUGAUAUGGUAUCAGUUGUUAGGUUUGAAUCUGAGAUAUAUGAGAAAUUGGAUUGAAUUUGGUGGGCUCAAAUUUAAUGGGCUUAUUUAGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.41%
ME_num:
MEP:
8.94%
HE_num:
HEP:
90.45%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_elongation_zone
Tau :
0.59
Avg Expression:
43.67
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.97178297052637 | 6.61272494715038e-38 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.87922253551286 | 3.7375998900988e-34 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.63783238553117 | 5.52505822762925e-28 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.54376598746853 | 2.3257125064907e-18 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.26564626945242 | 7.81955277593371e-15 |
| 6 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 1.1053046301866 | 0.0404425116996507 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.65471025447331 | 9.11374946058846e-29 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.33577057188276 | 1.0963109289108e-14 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.11074343190301 | 1.43336917559647e-13 |