Chr:
Chr1
Start:
20868852
End:
20873062
Strand:
+
Ref_name:
LOC107278527
Sequence
(XR_001545263.2):
GUCUUUUCUGCUGCUGCUGCUUUCUUUUCGGUGUGAGGAUUAAGUGCCUCUUCUGGUGUAUUGCAGUGGCAAGAAUGUGGGCUGUAGGUGGAGAAUUCAUACCACUCUUUUGAGUGAUCAAGUCAUAGUGAAGAUCACAAGGAACCCAUACGAUCAUGAGAAUUGUCAAAGCACUAGGAGGGCAGGCACUUGUGUAGGAGUGACACAGUUUUGGGUCUGUGAACAAGUGCUUGAUUGGUUGAAGGAAGAUGAAACAUUGGGUGCCAAAGAGCUGAGGAGGAGGUUGAAGGAGAGCCACAAAGUUGAGGUAACCUACAGGAAAGUUUAUCUAGGUAGGCAACGUGCUAUGGAUAAACUUUAUGGUCCUUGGUCCUGCAGUUUUGACAACCUGUAUAGAUUUAAGGCUCAGAUAGAGGAUACUAAUCCUGGAUCCUUUGUUGUAAUUGAUCACCAUACCAUCAACAACAAAAUAAGGUUUAAUAGGCUGUUUUUUGCUUUGAAAGCUUGUGUUGAUGGUUUCCUAUGAGGUUGUAGGCCAUAUCUUGCAGUAGAUAGUACAUUUUUAAAUGGAAGGUUCAGGGGCCGGUUGUGUGUAGCUUGUGCAGUUGAUGGUCACAAUUGGAUGUACCCAGUAGCUAUUGGUGUCAUUGACUCAGAAACAAAUGAGAAUUGGGAGUGGUUUAUGAAUAGGUUGAAAGAAGCUAUAGGCAACCCAGUUGGGCUUACAUUCAGCACUGAUUGUGGGCAAGCAGUGAUGUAUGGGGUGAGUGUGGUUUUUUCAUAUGCUAAACAUAGAGAGUGUAUGUACCAUCUAGUACAGAAUUUCAAGAAGAGACAUAGUGGACAAAUUUUUGAUGAUCACCUGUGGGCAUCUGCAUAUUCUUGGAGUCCUUGCAUGUUUGAUAAACAUUAUCAAGCCAUGGCUGUAGCCAAACCAGAGGCUAUGAAAUAUCUUCAGGAAAAUCACAGGAAAUUGUGGACCAGGAGCCAAUUUUCCACUUUGUCAAAAGUGGAUUAUGUUACCAAUAACUUCGCUGAGGCAUUCAAUAAAUGGGUAAAGGAUCAGAAGGGCCUGCAUCUGGAUGACUUGAUGGAUACCAUUAGACAGAUGAUCUUGAUUAAAUGGAAUAAUUGAAAAAGGGUUGCCGAAAAGUUUGAAGGAAAGAUCUUGCCUCAUAUAGUGCAGAAGUUGAGAGGAGCUAGCUAUAACCUUGACAUUGAAGUAAUCACAAGCUCACCUGAUGGCAUUGCAGAAGUUUGUGCUAAGGGAAAUUCUGCUAGUACCUUCAGGUUUGUAGUGAACAUAAAAGAGAGGACAUGCUCUUGCAGAGCUUGGCAAUGGUCAGGAAUACCAUGCAAACAUGCCAUUGCCUACAUCACAUCAAUCCCUGGGGCCAAUCUUGAAGACUAUGUGGAUGAGUGCUAUUCAAUUGAGAAAUUCAAAAUUGCAUAUGAAGGUUCUGUGCCCUCUAUUCCUGACAAGUCCAUGUGGUCCAAACCCACCCAUGGCUUCUUCAUGCAUCCUUCAUUGCUUAAGUCAACUGCAGGAGGAAGAAGGAAGAACAUGAUGAAAUCAGCUUUGGAGGGAGGUAGUAGUAGGAAGAAAUUAGGCACUAAGGGAGGUACUGGCAAAAGGCAACAUAAGUGCCCAAUAUGCCACUAGUUAGGGCACCAUUGGUACACAUGUAAGAAAGGCAAUCCAGAUGACAUAGCUGCAUAUGAGGCUGAGAGGGGUCCACCAAAAAAAAGGCUGAAGAAAGCAUCUUCCAGUAACACAGUGACUAGCAUUGUUGUGGCCACUCCUGGAUCAGGCAUGGUAUUCCCACACAAUGAGGUGGUGGCCAGUGCUACACAGAAGCCAAAGAGAGUUAAAAACGCCGCCAAAAAGAAGGGGCCACCAACAUCAGCAAGUACUGACAAUUCGGUGACGAGCAGGUCUGUAACUAGAUCCAAUAACCCCUUUGCUCUCCAAAUUGAACACCCUCCAGUUGUUCAUGACGACAUUGCAUCCUAUGAAGUCUCUCCACGGACAGUGGAGACACCAAGGAAGAAGCAAGCCAUCAAGAAGAUUUUUCCCACAUUUUCCCAAUUUUUCCCAGAUUUUUAAACAUUUUUAAAAUUUAUUCUCACUUUUUUCUGAUUUUUACCUUUUUUAAAAAAUUAUUUUCCAUUUUUUGAUUUUUAACGCCUUUUCUAAAUUAUUUUUCACUUUUCUGAUUUUUUAAACCCAUUAUUGUACACAAGGACAAAACUGUCUUUACAGAGCCCCUAACACCUCUGUUAUGUCUCCAUCCAUCUAAAAUAGCAUACGGGUCAACGAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
64.43%
ME_num:
MEP:
32.93%
HE_num:
HEP:
2.44%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.85
Avg Expression:
3.03
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.81189968925975 | 0.0110365308755707 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.75537806870564 | 0.00852098212545871 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.25543001304906 | 0.0384998559431236 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.56410342443757 | 0.000422068667226289 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.12447625996673 | 0.0133806610559966 |
| 6 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 2.17930368622691 | 0.00933305579854638 |
| 7 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 3.50887707235848 | 3.66085517579519e-05 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.7457514164358 | 0.00773991626196097 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.81281923852276 | 0.00343858795203933 |
| 10 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 3.56573202987995 | 1.42991225127973e-28 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.55313483420766 | 0.0013524189014036 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.26866841332892 | 0.00043541190531518 |