Chr:
Chr10
Start:
21873114
End:
21876982
Strand:
+
Ref_name:
LOC107278522
Sequence
(XR_001540658.2):
UAUAGAUAGCCCCAAAAAAAUUGGAAAUAUGACGCUGCACGGUGGGCCCACCGGGACAGAGAGACGGCCCGACUCAUCACCGAAGUGCCAGGCGGCUGGGCCUAGCUGUCAGUGACACGUCAGAGCGCCGGCGUAGGGGAAGGCUACCCCACCCGACCACGACUUCCACCGUCUUCUUCCUCCACGUUCCUAUCCAUGGCGCCAGUUCAUCUCGUGACGUCUCCCGCUCCCGCUCGCGUUGCUCCCAAAACCCUAGCGGCUAGAGCCGUUGCUGCCCGAUCGCGCAGCGAGAUCGAUCGGGCGGAGGCGCCGCGCCACGCCGCGGCCACCGGCAACCGGUAGUACAAGGAAGGAUGGAUGAGAGCGGCUGCGGCGGCGGCGGCGACGACGGCGAGUGCAUCACAUCUCUCCCGUCCGAACCCUAGCCGUAUGCGGAGGAGGAGCCGCCACGCGGCGCCAUCGGAUUCGCUGCGUCCGCUCCCACCAUUGCGCGAGUCGCACACCGGCCGGCCUGGUUCCUCUCGCUCGCCGAAACCCUAGCAGACGAGGCGAGCGGGGAUGUUACGAGGCUACGCCAUGGCGGCUGCGGGCUUUUUGGUGGCGGAGGCGAGCACCUCGAGCGCUUCGGUUGUCAAGUUGAAUUAUGGGGAAUCUGCUCUGGUUUUGAUGAAAUCUGCAUGGCAAUAAGGCGAUUUUGGAGAUUGCGUCGGUUAAUUGGGUCAUGCUGUUGGAUUCCCAGGAGGUUGAUAUCAGGCCACCUGAAUGUCACGAAGCUUCUAGAGCGAGAUAGAAGUUCGGGGAACCAUGGCUUGGAUGGAGCCACCACAACUUCACAGCUACCGUCCAGGUUGCCUGCUACAGCGAUACUCACCUUGCGGUGGAGGUUGAUGGCUGCCUUAAUGGCAACAAAGCUAGAGUGAGCUAACAAUUCAGGGAUCCAUGGCGCUAUCCAGCUGCUAGAGAUGAUUUGUCUCAAAUUGGUGUAUCCAGUGAAUGGAUAUCAGGAACUGGCCACCACAACGUCCCCACUUUCCAAGUUGCCUGCUACACUGUUGCUCACGCUACGUUGGUUUUGAAGGACUCUGUUGCUGGUUUGGAACUAUGCUUGGGAAUUUUGCUGCUGCGUGUUACAAGUAAUAUAAGCAAUUUUAUUUUGUCACAAGUAACUAUUCUCAACAAUAAAUUACGCCAGAAGGACUGGAACCCCGAGUGGCAAACCCAACUCAUGAUUAACACCAAAAUAUCCCGGUGCAUGUCACCCGCCGAAUAUACAGAGAAAGCGACUUUGGCCCAUGAACUACUUUGGUAUAAGAAAGGAAUAAGUGCCCGUGCCCGUGUCGUCGCCCGCUCACAUGCUCCCGCCGUCCGCCGUGGCGACCGCUGGAGAUUGCGCCGGCCUGCCUUAUUUUGUCGGGACCGUGAGAGAAGAUUGAAGAAAAGAGAGGAGAUGCGGACCUAUAUUUUUUUUCUUCUCACUACAUGUGGGCCAUUUAUUUUUUAUUUUGUUAAGAUGCACGGUUUUGUAUAUUUAUAAGGUCGAAGGUUUUUGUAUAAUUUUUGACCUAGGUGAAGAUUUCAUUUCUGGUAGGGAAAAGUA
Sequence
(XR_001540659.2):
AAUUGGAAAUAUGACGCUGCACGGUGGGCCCACCGGGACAGAGAGACGGCCCGACUCAUCACCGAAGUGCCAGGCGGCUGGGCCUAGCUGUCAGUGACACGUCAGAGCGCCGGCGUAGGGGAAGGCUACCCCACCCGACCACGACUUCCACCGUCUUCUUCCUCCACGUUCCUAUCCAUGGCGCCAGUUCAUCUCGUGACGUCUCCCGCUCCCGCUCGCGUUGCUCCCAAAACCCUAGCGGCUAGAGCCGUUGCUGCCCGAUCGCGCAGCGAGAUCGAUCGGGCGGAGGCGCCGCGCCACGCCGCGGCCACCGGCAACCGGUAGUACAAGGAAGGAUGGAUGAGAGCGGCUGCGGCGGCGGCGGCGACGACGGCGAGUGCAUCACAUCUCUCCCGUCCGAACCCUAGCCGUAUGCGGAGGAGGAGCCGCCACGCGGCGCCAUCGGAUUCGCUGCGUCCGCUCCCACCAUUGCGCGAGUCGCACACCGGCCGGCCUGGUUCCUCUCGCUCGCCGAAACCCUAGCAGACGAGGCGAGCGGGGAUGUUACGAGGCUACGCCAUGGCGGCUGCGGGCUUUUUGGUGGCGGAGGCGAGCACCUCGAGCGCUUCGGUUGUCAAGGAGGUUGAUAUCAGGCCACCUGAAUGUCACGAAGCUUCUAGAGCGAGAUAGAAGUUCGGGGAACCAUGGCUUGGAUGGAGCCACCACAACUUCACAGCUACCGUCCAGGUUGCCUGCUACAGCGAUACUCACCUUGCGGUGGAGGUUGAUGGCUGCCUUAAUGGCAACAAAGCUAGAGUGAGCUAACAAUUCAGGGAUCCAUGGCGCUAUCCAGCUGCUAGAGAUGAUUUGUCUCAAAUUGGUGUAUCCAGUGAAUGGAUAUCAGGAACUGGCCACCACAACGUCCCCACUUUCCAAGUUGCCUGCUACACUGUUGCUCACGCUACGUUGGUUUUGAAGGACUCUGUUGCUGGUUUGGAACUAUGCUUGGGAAUUUUGCUGCUGCGUGUUACAAGUAAUAUAAGCAAUUUUAUUUUGUCACAAGUAACUAUUCUCAACAAUAAAUUACGCCAGAAGGACUGGAACCCCGAGUGGCAAACCCAACUCAUGAUUAACACCAAAAUAUCCCGGUGCAUGUCACCCGCCGAAUAUACAGAGAAAGCGACUUUGGCCCAUGAACUACUUUGGUAUAAGAAAGGAAUAAGUGCCCGUGCCCGUGUCGUCGCCCGCUCACAUGCUCCCGCCGUCCGCCGUGGCGACCGCUGGAGAUUGCGCCGGCCUGCCUUAUUUUGUCGGGACCGUGAGAGAAGAUUGAAGAAAAGAGAGGAGAUGCGGACCUAUAUUUUUUUUCUUCUCACUACAUGUGGGCCAUUUAUUUUUUAUUUUGUUAAGAUGCACGGUUUUGUAUAUUUAUAAGGUCGAAGGUUUUUGUAUAAUUUUUGACCUAGGUGAAGAUUUCAUUUCUGGUAGGGAAAAGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
38.82%
ME_num:
MEP:
59.15%
HE_num:
HEP:
1.83%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.81
Avg Expression:
3.08
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.85560302937077 | 0.000953825628454121 |
2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.50192600379944 | 4.16810924518639e-09 |
3 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.67797362539021 | 7.85658573977609e-23 |
4 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 1.45477081208719 | 0.018014948496959 |