Chr:
Chr7
Start:
27233373
End:
27235275
Strand:
+
Ref_name:
LOC107278504
Sequence
(XR_001547296.2):
CCUUCUCUCUCUUAACUACUCUCGGCUUCUCCUCCUCACGGCUCUGUUUCUCUCGAUUCUUCCUCCUCUUCUCUCUGCUCUCUCACGCACGCCCCAGAGACGAAAGGCGCCGGCGAUGGUGGGCUGCCGCAGGGCGCGCGCCGGGGAGGAGACCGGGGAGCUGGCGGCUUAGGCCGGGCGGCGCGGCAGGAGGCAGCACCCCUGCCGGGCCAGCGCAUCCAAGCGCGCAGCUGGGGUGACGGCGCGGCACGGCGGCCAGGCGGGUGCGCGGCCGGGAGGCGAUGCAGAGAGGUGGCGUUGGCGGAGGAGGGAGAUGAGGGAGCUGCACCAGGUAGGAGGUGGUCGGGCGCCGGUGGCGAAGGGAGGAAACCGGCGGCGACGGCGGCCGAUGCGACGGCGACGCCGAUGGGCGUGAGGAGGCCGCGGCUGGGGGCGCUCGUCCCGGUGCAGGGACGCGGCCACGCAAAAGGGCCGGAGGUGGCGCCUGUGCGGGCCGAUCUGGUCGCGCGCGGGCGGCGUUCCACCCGGAGCGGCGGCGACCCGGAUCAAGGCGAUGAGGGUGGCGGAGGUCGCAGUGGUUCCUCGGCUGGGCGGAGACAGAGGCGGCCGUGUAAGCUGCUCGCGCGGCCGGUGUGGCCGUGGAGGCAGCACUCGCUCGGGGUCGGCCUGGCCGUGCGCGGCGGCAGCGGAGACGGUGCGGGGAGGUGAAGGCGACGAGCGGCUUGGAAGGAUGAAGCAGAGGUGGCCGUGACAAAGUUGACGGCGCGCAGGGUCCGGGCCGCACGGCUUGGAGCGCACUCAAGGUGCUCGUCCGUGCGCCUCGGGCCGGCGCGAGCAGGAUGAUGGUGGCGGGGAUCGAAGGGCGAGGAUGGAGGAGGAAUGGUUGGGCAUGGCAACUCUGGUAGCCAUAGUUUUUGCUUGAUUGUGGAUGGCUUCGAGGAUAAGGAAUAGAGCGAGGCUUCGAGGAUAAGGAACGGCACAGUGGCGAUGCGGCGGCGUGGACGCAGCUCACGCGGGCGGCGUGGACGCUCGUCUGUGAGCAGUGAAGAACAGGGACGAGCGGUGUGGACUGGGAGUAGCGGCGCACGCACAGGCGACGGCCUGGGUGGCGGCGAAGUGACCAUCGGUCACUAGGCUGCCCCGGAGCACGUGUCGGCGGCGGAUGGGAUGGACGGCGAUGAGGUGGGCCAGGAUGUCGACAUCGCCACAGGGGGGGAGGCUUACAAGGGAUUUGGUGGACUGGGUGCUUGCAGGAAUGGAGGAACGAGCGACCUUGCUCGGUGUACAGAUAUGGUGGCGCCAAGGAUGGACGCGGUGCGCGGCGUGCAUCGCUGCGGCGCACGGAGGCGCGACUCGGUGCACGGCGCGGCUGGCACGGUGCAACGGCGUGGUUGCCGACUGAUGCAAGGCGGCGCGGCUCAGCACAGUGCUCACCCGGCUCAACAUUUUGUCGAACACGUGGUGGGCAUGUGAACCUGGCUGGGAGGAGGAAGGAGGAAGGGCAGCUGGGCCAGCUGAGGUAAGGAAGGGGGUGGAAACAGACUUGGGCUGGAAUGAGGGAAAGGGAGGCAGGAUGGACUUAGGCUGUGAUGAGCUGUUGGGUUGGCAGAGCGAGAGAGAGGUGGCACAAGUGUAAAAGGAUACUUUGUAUAACUGUAGCAAGGAAUUUGUACAUCCCCAUUGUAAUUGGAAUUUUGUAGAUGGACCCCAAACAUGUAAUGGGAGUGUAUAACUGUAAUUGGACUGUAUAAUUGGACAUUCGGCUUUGAGCUGGGAUUGAAAUAUGGAAUUGGGGUUUGGAACUAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
10.16%
ME_num:
MEP:
47.56%
HE_num:
HEP:
42.07%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.81
Avg Expression:
27.04
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.83275522973352 | 0.00286110922047237 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.37418741574038 | 3.74951854536692e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.12551841926199 | 0.00126384605860281 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.31195017549718 | 0.000279234577809331 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.80240127463738 | 9.74467005405035e-05 |
| 6 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 1.55603114763375 | 1.14733144469446e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.3874090402831 | 0.0107244120227523 |
| 8 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 4_days_after_shift | 1.04085811364574 | 0.000153573272917599 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.69509698721216 | 0.000311772334990707 |
| 10 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.4026008591849 | 4.74565050073134e-09 |
| 11 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | 1.23248987746955 | 0.00146167407545048 |
| 12 | Baldo // leaf // control--/--Baldo // leaf // 100 mM NaCl | 1.08351418244125 | 0.0107865343438613 |
| 13 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 1.00223766169419 | 2.78238799859905e-06 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.45469843774162 | 7.99338578091866e-06 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.45117952584226 | 0.00880108066835229 |
| 16 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.63515485453527 | 6.88416025997854e-07 |
| 17 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.44921731247681 | 3.93948165759201e-15 |
| 18 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.37584290132958 | 0.00678612472400687 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.07566486610759 | 0.000117481973761107 |
| 20 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.98062251668571 | 9.70051087494124e-12 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.79180225677831 | 5.22090731998229e-06 |