Chr:
Chr4
Start:
31918116
End:
31919940
Strand:
-
Ref_name:
LOC107278467
Sequence
(XR_001545265.2):
AAAGCCUAAAACAAAGACCUCCCUCCUCCUCCGGUUCGACGGGCGUGGCGUAGCUGUACCCGGCCCCGCCAAUGUAAAUGUGCGCUUGUCUAGUUCUUCAGCUUGGGUCAGGAGGACCUCAUGGCCAUGGGGGCCAUUGCUUGCAACGCAUGCCCCGAGACUGAUGCAAUGUUGUGACAGGGAGCGUGGCAGGCAGCGUCCGUCCACGAGAUGAGAUGAUGGGGGAUCGAAGCAGAAGCAGAGGAGCAGCAUGCAGUAGUUUUUCUGGCUGGCUGAUCUUGCAACAAAUUGGGUGCUGUGCAUGUAUGCAGAUGCAUGUCGUGCUCCAUGGGGAAGAAGACGGGGUUGGUUCUUGGUUCUUGUUGCACGGCAGGCAGCGGCAGAUUGAGGUGAGCUGGUGAGGUGACCAUCGUCGUAAGGUUACAGGUCUUACGCACUGGAAGUCUCAUUGUUCAACUUCAACCUCCAUUUCAGAAGCCAGUCAAUGCCCCAAUCUCCUGAAUCCUUAACUGCAUAGCUAUUACUACUACACUUUGAGCGAGUCAGGAGGAGGACGAAAUGCACACACAUACUCCAUAUGGGGAAUGAAUUACUCCACAACACCUCGCAAUCAGAUCGAUCAUAUUCAACAGAUGAAAAACCGAGGAAAUUAAAUGAGAGUGAAUAAUGGUCAAUGCACUGGCUGCUAGUGAAUCGUGAUCGAUCAAUCGAUGGACUGACCGAGUCAUCAGUUCAUCACGUAUGCAUGCUCCGUGCAGAUUGACCUGCAUAUCUGUUACGAGAUUGGCAGGCAAAUUAAGGCAGCAGCAGCAGCAGCAACCAUAUAUGGAUCAGAACUUGACCAUGUCGCCCUAUAGCCAGCUACUAUAGUAGUACUCUAGUAUAGGAGCAGUAGACAUGUACAUGUAAUUCUACGUGAUCUUCCUAUAUAUCGAUCUCUAUGUUAAUGAACCACUGUCAGGCUUGCUGGUGCACGGAAAGAGAAUAGUGCUGUAGCCAAGCCAACGGCGCCGGUGCCGUGGACUCGUGGAGCCUGGGUGACGAAGAGCUUUUUUUUUUGCCGGCUAAUUUUUAAGGGCAUUUUUUGGUGAUUGACAAUGGUGACAUUGGCGGCGAAGCCUUAUCAGGGUUGGGAGUAGUAUAUGAUAAAUUACAGGGAACCAACUCCCAGACUACACGGACUGUCAUAGUCCGGGAGCUGUGUCGUAGUCCGGGAGCUGUUCCGUCGGGUGUACAAUUUAUCGUAUACUACUCCCAAUCCUAAAAUUUUAGUCCUUAUUUUCUUCUUAAAUGCUGCUCUCCACAA
Sequence
(XR_001545266.2):
UUUUUUCUCUUCUUCCCAUUUUGUUUGUUCUGCAGGGAAGAUUAGAAGAAAGCCUAAAACAAAGACCUCCCUCCUCCUCCGGUUCGACGGGCGUGGCGUAGCUGUACCCGGCCCCGCCAAUGUAAAUGGAGCGUGGCAGGCAGCGUCCGUCCACGAGAUGAGAUGAUGGGGGAUCGAAGCAGAAGCAGAGGAGCAGCAUGCAGUAGUUUUUCUGGCUGGCUGAUCUUGCAACAAAUUGGGUGCUGUGCAUGUAUGCAGAUGCAUGUCGUGCUCCAUGGGGAAGAAGACGGGGUUGGUUCUUGGUUCUUGUUGCACGGCAGGCAGCGGCAGAUUGAGGUGAGCUGGUGAGGUGACCAUCGUCGUAAGGUUACAGGUCUUACGCACUGGAAGUCUCAUUGUUCAACUUCAACCUCCAUUUCAGAAGCCAGUCAAUGCCCCAAUCUCCUGAAUCCUUAACUGCAUAGCUAUUACUACUACACUUUGAGCGAGUCAGGAGGAGGACGAAAUGCACACACAUACUCCAUAUGGGGAAUGAAUUACUCCACAACACCUCGCAAUCAGAUCGAUCAUAUUCAACAGAUGAAAAACCGAGGAAAUUAAAUGAGAGUGAAUAAUGGUCAAUGCACUGGCUGCUAGUGAAUCGUGAUCGAUCAAUCGAUGGACUGACCGAGUCAUCAGUUCAUCACGUAUGCAUGCUCCGUGCAGAUUGACCUGCAUAUCUGUUACGAGAUUGGCAGGCAAAUUAAGGCAGCAGCAGCAGCAGCAACCAUAUAUGGAUCAGAACUUGACCAUGUCGCCCUAUAGCCAGCUACUAUAGUAGUACUCUAGUAUAGGAGCAGUAGACAUGUACAUGUAAUUCUACGUGAUCUUCCUAUAUAUCGAUCUCUAUGUUAAUGAACCACUGUCAGGCUUGCUGGUGCACGGAAAGAGAAUAGUGCUGUAGCCAAGCCAACGGCGCCGGUGCCGUGGACUCGUGGAGCCUGGGUGACGAAGAGCUUUUUUUUUUGCCGGCUAAUUUUUAAGGGCAUUUUUUGGUGAUUGACAAUGGUGACAUUGGCGGCGAAGCCUUAUCAGGGUUGGGAGUAGUAUAUGAUAAAUUACAGGGAACCAACUCCCAGACUACACGGACUGUCAUAGUCCGGGAGCUGUGUCGUAGUCCGGGAGCUGUUCCGUCGGGUGUACAAUUUAUCGUAUACUACUCCCAAUCCUAAAAUUUUAGUCCUUAUUUUCUUCUUAAAUGCUGCUCUCCACAA
Sequence
(XR_003242053.1):
UUUUUUUUUCUCUUCUUCCCAUUUUGUUUGUUCUGCAGGGAAGAUUAGAAGAAAGCCUAAAACAAAGACCUCCCUCCUCCUCCGGUUCGACGGGCGUGGCGUAGCUGUACCCGGCCCCGCCAAUGGAGCGUGGCAGGCAGCGUCCGUCCACGAGAUGAGAUGAUGGGGGAUCGAAGCAGAAGCAGAGGAGCAGCAUGCAGUAGUUUUUCUGGCUGGCUGAUCUUGCAACAAAUUGGGUGCUGUGCAUGUAUGCAGAUGCAUGUCGUGCUCCAUGGGGAAGAAGACGGGGUUGGUUCUUGGUUCUUGUUGCACGGCAGGCAGCGGCAGAUUGAGGUGAGCUGGUGAGGUGACCAUCGUCGUAAGGUUACAGGUCUUACGCACUGGAAGUCUCAUUGUUCAACUUCAACCUCCAUUUCAGAAGCCAGUCAAUGCCCCAAUCUCCUGAAUCCUUAACUGCAUAGCUAUUACUACUACACUUUGAGCGAGUCAGGAGGAGGACGAAAUGCACACACAUACUCCAUAUGGGGAAUGAAUUACUCCACAACACCUCGCAAUCAGAUCGAUCAUAUUCAACAGAUGAAAAACCGAGGAAAUUAAAUGAGAGUGAAUAAUGGUCAAUGCACUGGCUGCUAGUGAAUCGUGAUCGAUCAAUCGAUGGACUGACCGAGUCAUCAGUUCAUCACGUAUGCAUGCUCCGUGCAGAUUGACCUGCAUAUCUGUUACGAGAUUGGCAGGCAAAUUAAGGCAGCAGCAGCAGCAGCAACCAUAUAUGGAUCAGAACUUGACCAUGUCGCCCUAUAGCCAGCUACUAUAGUAGUACUCUAGUAUAGGAGCAGUAGACAUGUACAUGUAAUUCUACGUGAUCUUCCUAUAUAUCGAUCUCUAUGUUAAUGAACCACUGUCAGGCUUGCUGGUGCACGGAAAGAGAAUAGUGCUGUAGCCAAGCCAACGGCGCCGGUGCCGUGGACUCGUGGAGCCUGGGUGACGAAGAGCUUUUUUUUUUGCCGGCUAAUUUUUAAGGGCAUUUUUUGGUGAUUGACAAUGGUGACAUUGGCGGCGAAGCCUUAUCAGGGUUGGGAGUAGUAUAUGAUAAAUUACAGGGAACCAACUCCCAGACUACACGGACUGUCAUAGUCCGGGAGCUGUGUCGUAGUCCGGGAGCUGUUCCGUCGGGUGUACAAUUUAUCGUAUACUACUCCCAAUCCUAAAAUUUUAGUCCUUAUUUUCUUCUUAAAUGCUGCUCUCCACAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
89.63%
ME_num:
MEP:
9.96%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.97
Avg Expression:
4.65
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.77068642693227 | 0.000603722767939075 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 5.61046330553532 | 3.64434713499299e-05 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.05381044844938 | 0.0473895532566349 |