Chr:
Chr4
Start:
32939265
End:
32943659
Strand:
-
Ref_name:
LOC107278452
Sequence
(XR_001545231.2):
UGUGAAACUCGUGCAUUCCAUCUGAAAACUUACCCUUCAUUCCUCUUUCCCCAGUCCCCUUCUUUCCUCGCCUCCCCUGAGUCAUCACAGUCACAAACGUCAUGCGCGGAUCGGGCAGUGAGCGAUGGGAGCCCACGAGCGACCGUAAAAUUAGCCAUCCGCAACCGCAAGAGAUAAUGAGAUGUGUUGAUGAUCAGAUUUUCCAGCUCCCAAGAGAAAUCCUACCGAAUAAACGCAUUUCUGUAGCAUCGUCGUCCGUAUCAUUUCGUCGAGGGAUUACAGGCACCUGUAAGCAAUAACCCUACCUUUCCUCAACAGGCUCGCAUCCCAUCGUGAGAAUUUCGUCUGCGUUUCACAGGUGAGGAUGCGGCAAGUUCAGAGAAGUAAAAACAAGCAAAUAAACAUGAGUGAACUGGUUAACUCCAUGACGCAAGAACUUGAUUAUUAUUGGUCACUGGGCACUGAUAUUGAUAAUGGAACAGAAUCAUGCUUAAUUUACAAGGUUCAGCAACAUAUUCGUGACAUUGACAGAUUUUCAUACGAGCCCUGUAUUGUAUCAGUUGGUCCAUACCAUCAUGGAUCUGCAGAUCUGCAAAGUAUGGAGAAAGUAAAAUGGGGCUAUGUGGAUGUAAUCGUUAAACUGAACUGUAAGAGGAAUUUGCUGGAUUACUUAACAGCGGUUGGGGUUAUCAAAACGUGCAAGGAGCUGUUAUUCUGAAGAUACCAAGAUGGAUAACGAGGCCUUUCUGCAUAUGCUCUUACUUGAUGGAUGCUUCAUUCUGUGUUCUCUCGGGGGUGUGCAGAGAUUCAUGCAAAAUUGACAAGUAUAUAAUGAGAGCGAAGAUAUUGAAAACGCAAGGGCUGUUUGCGGGGAACAGCCAGAGCGUCCUAAGGGUGAGGAUGAUGAGGCAUGUCGAGAGAGCGUCCAAGUGGGGGAAGAAGAGGGCGCAGGAUAUAAACAAGAUUGCAGAAAGGGCGGACAUUGGUUUGUGAGGUUUGUCAAUCACGAUUUAUUAUUGCUGGAAAAUCAGAUACCAUUUUUUAUUGUGAAAACAAUAUUUGAACUUGUUACAGAUAAUUGUGCUUCAUCACAAUGUUUGACAGAUGACCUUGCUAAGUAUGUCGAGGCUGCUUUGCGUUGGUAUCCAAAAGCAAUUACUGAUUCUGACAGACCGAAAGACUUUCACCAUUUGCUUCACCUGUGUCAUAUUUACUUCCAACCGAGUCAGAAGCUGGAGGAAGAUCACAACUAUAAAUUUGUGCCUCAGUACAUUCACAGUUUCCUCAGUUUUGGACGGAAGUAUUUCAGAAUCAACUACUACCUAGAAAACAAUAGACAUGAUUCAUCAUUCCAGAACGAAGUGGAUCUGGCACAAGGAGGGGAUCAGCUUAAUCGUUGGCGACGAGCUGCACAAUAUCUAGAAGCCGGAAUAAAGUUUAAGAAACGGGAAUAUGAUAAAUUAAAACCCCAUUCUCUGCUAGACAUUUGGUUUAGCAAUGGUUCCAUGGACAUUCCGUGUAUUGUUGUUGAUGAGUACACAGGGAGUCUUUUCAGGAACCUUAUUGCGUUUGAACAAACCUGCCCUCAAUUUGGAGAUGACUUCACUGCUUAUAUUGUUUUCUUGUCUCAACUUAUAAGCAUGCCAGAGGACGUUACGCUGCUUAUUCAGAGAAAAAUCAUUGUGCACCAGCUUGAUAGCGAUGAAAGGGUGUCUGAUCUCUUCACCAUGCUCAGCAAAGACGUGGUUUUUGAUUUCAAUGGUAACUACUACUUAAAACUCUGUGCCAGACUAUGGAAGCUCACUAUCAAAGUCUCAUCAAUCGGUGGAUGGCAUGGCUCUGGCUAAACCACUUCAGCAAUCCAUGGCUGGCUUUGGCUGCGAGUGCGACUGUCAUUGUCCUCAUCUGCACAAUUGUGCAAACCGUUUUUGGCAUACUGGCUUAUGUUAAUCCGCCGAAGUAAGCCAUGUACAGUAACUGUGACAGUGAGCGAUCUCGUCAGAUCUCUGAUCUUGCUUGUUAAAGCAGUUCACAGGUUUGUUUCAGUACAAUGCUAACCAGAAGCUCGUCACUUCUUCUUAAGGGGUGUCAUUUCGUGGUGUGAAGUGAAACAUUUAAGGCCUGUUUGGUAUAGCUCUAACUCCUAAAUUUAGCUUCAGGAGUUGGGUCUGGAGUGGAGUUGUGGAGCUGUCUAAACCCAGCUCCACAACUCUAGUUCAUUUUGUGAGAGAGCUCCACCCAACUCCACUCCCAGUUUUGGUGGAGCUGAAACUGUUUGGCUGAGCUCCAGCUCCAGGAGAGGUGGAGCUAGAGCUGGAGCUGUGCCAAACAGGCCUUUAGUUGGUGAAUUUUUGGCAUCUAGAGUUUCAGACAAGUAGGAAGAGUGAACAUGAAUGUUCACUUGUCAUGAGGAUUUUUACCAUCCAACGGUACCGCUAGGUACCAAAUCAUGGUCGUUGGAUCGAGCCAGAUCCAACGACUAACAGAGUUAGGUACCGCUAUGUACCACUUCUGCUCCUGAAUUGGUACUUCGCGAUAAAUAGAGGUAGAGGGGCAAGAAUGUAAUUUUACGUACGGAUGGAUGAGCGAGUUACGACCGGAACGAUAGAGCUGGAGGCGUGCGCCAUCUCCUUCACAGCCGUUGUGCCGCAUCUCCUUCGUCACCACCUCCUCCGCCUCCGUCGCCUCGCCACCUCGCCGCCCUGCUACCACCUCUUGCUUUGCUAGCGCCGCUUUGCCGCCGCCGCAGCUGUCGCCUCCUUCACCGGUGACACCUACUCCGCCGUCGCCACCUCCUCCUCCUCCUUCGUUGCGGCGUUGCCUCCACCAUCCCCGACGGCUCCUCCUAUGCGCCACCUACUCUGUUAUUUUUCCUCCCGAUUGUACCCCUCCGGAAUUGUACUGUUCGAUUUGUUUUGGUACCUACAGGUACCAGUACCAGGAGGUAUAAAUUGCAGGACCGUAAAAAUGCUCUCAAACAUAACUUGUUUUCAUCCUUUGGAUUUCUGGACCUAAACCUAUUCAGGGACCAACGGGAAUUUUUGGCUCAACACUUCAAUUGACUUUUUUUAGAAAGGUACUUCAACUAACUUACAAAGGUGUAAGAAAGAAAUGGAGAAUUGGAUACACGCGAUACAGCAAAUUUGUUUGUUCUUUUGAAGAAAUAUAGAGUUGGUGUCUUCAUAAUUUGUCUUUCAGGCUCGUGUUUCUUCAAUAACUUGUGUAAUAUUCACGCUAACUCAAAAAUAAUUAAGUUUAUUCUCUCUCAUAGGAGUAGUACUCUCUCUGUCUAAAAAACGACUUCAUUUUUCCUUAUCACAUUUAUCUUACAUUCUCUGUAUUUUUCCUUCAAGAAACGCAAUACUCAUGCAGGCGUUCACAACGCAAGCUCACUUACACCUAUAAAUACACACGCACACCUUCAAAAGGUUAGGUCGGUAUAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
77.03%
ME_num:
MEP:
21.95%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.95
Avg Expression:
8.79
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.27922091759391 | 0.00559553715570935 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.49598199212405 | 0.0383090030747815 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 6.74767129853181 | 6.70397310299677e-08 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 7.59706206576953 | 8.51227948341118e-10 |
| 5 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift | -1.38167448363975 | 0.0101310184860641 |
| 6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -1.27471509549525 | 0.0185307234957892 |
| 7 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 2.09639070557743 | 0.0413853426002128 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 5.385863661218 | 5.45073785545253e-05 |
| 9 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -3.05481299701674 | 0.0437427569606416 |