Chr:
Chr3
Start:
24046476
End:
24047310
Strand:
+
Ref_name:
LOC107278448
Sequence
(XR_001544242.2):
UUGCGGCCGGGAGGUUGCCACCCCGUUCCUAGCGUUGCGUGCGGUGACUUCUCGUGGCUUGCAUCGUCUGGAUCUGCUGUCGCCCGGAGCUUGCUGCUCGUGGUGCAUGAUGAUAGCCCGUCGACGAGGUGGCGGUUCGAGAGCUUCCAAUGCCAAGGUUCCAUCCGUCAAGAUUCACAGGAUUUCUCUUCCCCAUCCCCUCUUCGUAGAGGCAACCGGAUGGGGAUUGCCGGUUUGUCGAGCGUGCUGCACGCCGAAGGAGGCCCAAGGUUGCAUUCGUCACGGCAUUAUCGCAGCUCCCUGUCGAUGUGCAACUUCUCUGUUGUGUGGUUUCAAUAUGAAGAUUGUAGCCCUAGUGCAGUUUUCCGUUCAUUGGAAACAGAUGGUUUUAUGCUCUCUUUAUCUGUUUGGCAAUGUACUGGGAUUUAUUCCAGUGAACUCUGUCGUUUUAUAUUAAUGGAGGUUUAAGUUUAAAAAAAAAACAACCCAGCCGACUGCAUAUGCACGCCUGUAUUGUAACGAUUUAAUUUUUUUCCUUUCUUCCUUUCUUUCUAUGCACCUUGCAACAUACUAAGAGCAAGCUAACAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
76.22%
ME_num:
MEP:
13.41%
HE_num:
HEP:
10.16%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.95
Avg Expression:
123.90
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.30423958194185 | 0.00466652664530286 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.33600534055932 | 0.0108205571388712 |
| 3 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 4.56839113626176 | 5.90942440854273e-20 |
| 4 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 5.34034951130248 | 0.00113770155396548 |