Chr:
Chr1
Start:
748764
End:
749578
Strand:
-
Ref_name:
LOC107278390
Sequence
(XR_001542428.2):
UGGGCUUGUCCCCACUCCCCAUCGUUCUCCCCACCAUGGACUCCGGCAAUCUGCUGCUGCUGCUGCGGCGGCGGCGGCGCCAAAAAUGGCCUGAAUCGACCCGACUUGCAGUGCAGCAUCAUUCCCAUGGCCUUGCGCCACCGCGUGUCGCUUCCCGCUGAGCGCAUCCACCGGUCGAGUUCACCUCGCCUCGACCCCACGCUUCGCCGCAGGGGAUCUGUGUCUACUAAGGCCUCCACCUCCUCGCUCUUGUUGGACCACGCCGUCCGGCGAUGGAAGCGGCGGCGGAUCUCUAUCCCCUCCCUGACAUUGCUGGAGAUUUUCAGCAGUAGCAUGGCAGUAUGGCACGGUUGAUUGCCUGCCCUACAGAUUUCUCUUCUCGCAUUUCCUUCUAAUAUCCAGGUCCUGGCUCUUUCAAUGGCAUGGAUUGGAAUAUGCAAGCAACAAUCGACUACUUCUUACUAACUAGUGAGAUCUAAUUAACUUUUCAGUGGCAAACAGACGAUGGAUUCUCUUAUGAAAUUUCCACCAGGUACUGACCCAUGAAAAGGACAAUAAGAGUAUCUGACUAACUAGUGGAGCUAGGAGUACAAUACAUCAGGAGAUACAUCACAGCAACUGAUGAACAGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
34.35%
ME_num:
MEP:
64.02%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_meristematic_zone
Tau :
0.63
Avg Expression:
2.81
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.15513963651707 | 0.0273457786362973 |