Chr:
Chr3
Start:
26461274
End:
26464793
Strand:
-
Ref_name:
LOC107278378
Sequence
(XR_001544572.2):
CCUCUCCCCUCUUCUUUUCUCUAGGUGCCAUGAGGUCACGGGGAGGUUUGGCGGCGGCGACGCGGGAAAAGGGGAGGGCAUCAACGGUGGGAGCGCAGAGAGCCGGAGAGGGGGGCGGAUGGGCACCAGAUGCGGCCAGCGGUGACGACGGCGGCGGAGAUGGAAAAGAGCGGCAGGCGGCUCCACCGCCGUUACUUGAAGGGAGACAAGGUCGUCGCCCUUCUCCCCGAUGGCCGCUUCCUGCCACCCUUCUCCCCGUCGGCCGCCGGCCGCCAACCACCGGCCAUCUCUUUCUUGCGCGCGCUCGCCGGUAGGCCAGGGAACUCGAGGAGGGAGGAAGGAUGCCAGGAGGGAAAGGGGAGGAGGCAGAAGGAUGUAGGGAGGGAGAGGGAACAUGAGGUCGUCGUCGCUCUUCUCCCCCAUGGCCGCCGUCCGCCGCCCUUCUCCCCACCGGUCAUUGGCCGCCGUCCUUCUCUCUCUACGUGCGCUCACCGGCAAGCCAGGGAGCUCGGGGAGGGAGGAAGGAUGCCGGGAGGGAGAGGGGAGAAAGGCGAUGGGCGGAUCCACCGUCGCCGCUCGAAGGGACAUGAGGUCUUUGUCACCUAACUCCUUCCCGCUGGUCAUGCCCUCAUCCCUGUUGGUCGCCAUCGCGGCCCUUCUCCCCACCGGCGCCGGCCGCCGUCCUUCUCUCUCUUCGUCUAUUGGUUAGAUUGCAUCUGGACGUGUGUAAGGCAAAAAAAAAAUGCAGAAAAAGCACGUCCAAAGAGUAUGUUACUUUUAUAUCAUACAAAGAAAAGACAGAUUCUCCCAACUAAGCUUUUUCAACCAAAACAGAGUAAGCCUUCCAUGUAAACAAUCAGACAAUGGAUGAGCUGAGAAAAAAAAUGCAGGGUGCAGCAUGGAACAAAUUAGCAGGCUGUCAAUUCACUCGCUAUAUAAUUUACUAUGAUGCAAGACUGAUCGGUAGAUGAAAUAAGAUCUGCUCUCUUUAUCAGAGCUUAAGCCAUGGUGUGAGUUUCUGCGGCUGUUCUACCCGGUCAUGGUUUGAAGUGUUGAAGAGGAUGGCUCGGCCCCGUGGUGCGUCGUCCCUCUCCCCCGUUGGCGAUGGAGGGCGGCUGCAAGCGGCGAGAAGCUGGAGGCAGGGUUUCACAUUUCGGACUGAAAUUUCCUAAAUUAUUUUGGAAAUUUCGGAAUGAUCAAAAUUUCGGAAAUUCGGGUCAUUUCGGACCCCUCCAAUACGAUAUUAUUUCAGCUGAAAUUUUUAAUUUAUUUUAAUUUUUCAUGAAUUUUGGUAACAUUUGUUCAAAUUUGAUUAGAUUUUGUUUUAAAUUUUAGAAAUUUCGGACCAAAAUUAUUUCGUCAUAUCGGCAUUGCCCGAUACAAAGGCCGAAAACGAGAAAGUGAACCCUGGCUGGAGGUGGGGAAGAGGGUGAAGACUGAGGAGGUCUGGAGUUAGCGAUGUCUGCGUCGGGUUUGUGACGGCUCGAUCUACCUGUUCGUGAUACUGGACCAGGCGUCCAAGAGGAGGAAAAAAGAUGACAUCAUGGUGGCGACGGUGAAUGUGGCCAUGACUCCGCCCACCCAGUGUCCUCGGCGGCGGCGGCUGCGGCGGCCGGCGGCGACGUCCCGGCCCGUACCCCAGCGUCGCCAGGAUCGCCGAUUCCGACUGCUUCCCCAGUUUGGAAGCCAACCAAGACAAAAGCAAGGGCCAGCAGCAGUUUGAACGAUUAUAACGAGUGUAAAAAAGAGAGAGGUUCUUAGCACAUAUUCGACAAUCAGUAAGAUGCACACUUGGGAUUGACCUAAAAGGCUGAUUGUUGUUCUCUAUCUUGUGCAAAAUGGAAAUGCUGUGUCUGUAUGGACUGUAAAUGCAGCGAAGGACAGUGAAUAGCUUCUGCCAUCACAAGAAUUUCUUUCCAAGUUCUCAAGCAUUGCAGCUUUCGAAGGAGAUGUAAGCUACACAGAUGUUCAAUUAAGGUUCAUGCUAUUGAAAAUCACCGACCACCAGUGUAGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
36.59%
ME_num:
MEP:
62.2%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.80
Avg Expression:
3.58
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.10000665720348 | 9.05312173107805e-10 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.50207489535137 | 5.62214175887485e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.13333179551733 | 2.75765524694351e-11 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.5177028371919 | 4.69864357204533e-07 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.48318158632189 | 6.13160333538469e-10 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.5605264447175 | 3.7125617769782e-10 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.82124231326515 | 2.07819610261742e-10 |
| 8 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.51186210882386 | 0.014829223584238 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 2.56838880908854 | 3.10758477737424e-10 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.67976444427929 | 5.88149418283771e-15 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.28138372975724 | 1.06730938240339e-14 |
| 12 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.25949229115925 | 0.00496831689011119 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.05588142193641 | 1.44985192878501e-08 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.85681811114299 | 4.32566458462186e-12 |