Chr:
Chr12
Start:
9371303
End:
9373446
Strand:
-
Ref_name:
LOC107278356
Sequence
(XR_001541974.2):
CAGCAGCGAAUUUUCAGUUAUCGUCUCCCCACUUUUUUCGGAUAGUUUUUUUUCUCGCCAGCGACAGUGAGCGCCCUUCUUCUCUCGCCGCCCGUGCAGCGGGGGUCGCCCGCGCCGCCGCAAGUUCCUUCCAGGCGGGGAUAGGCGGCUGCGAGGUAACGUGCUACACAACACCGCCCCAAAACAUUUUCCCCUGUUGGACGGCGACUUGGGCGCUCCAUCGACUGCUGGAUGGCACCAUGUGGUUGAGGCCCGUGGCACCGUCGGCUGCCCCUCUGUCGCCGACAUCCAUCCCAUCGCCGGAUCUAGGAGAGCUUCGCCCGAAUCCUCUUCUGAUUCUUGCGUGUCGGUGGUGGGUGGAGAGCAGCGGUACCAACGACAUUUGAAGCACAGAGGGUGGCAGGAUUCGGAGAGGAGGCUACGGAUCUGGGGGUCCGAUGGGUCGUUCUCCCUCCUCCCUAAAGCGGUGGCGAAGGAUGUCAGUAAAUUGUCGUUGGCGUCAUGCGCGGCAGGUCAGCGCCGCCAAGAAAUACAGGAGGUCCGUGUAGCGGUUGUAGUCAAUUGAAAUCUAUUUCAGGAGCACAAUGUAACCCGGUGGACUCGAAGAUGAUGAAAUGCAUCAUGCGGUGACCUGGGAAACAUUGUCACUAGCGCCGGAGCGGCCAUGCUUGAUCCUGGGCUGCCCAUCCUGAUUCCUAAUGCUACCGCCACACAGUCCUGUUCUAAGCUGGUUGGUUGGCGAGCCAGCCGCCUCCACUACAACAUUCGUCCAUCAAAGACGAUGGAUCCCGCGGUGAAGAGGAGGAUCUGCUGAUCUGAAUUUCUUUGAUGAUUUUUGUUGGAGUGUUUAUAUCCUUUGUAACUUUUUUACUUUUGAGUUUAAGCAUGUAAUUUGUUUAUUGUAUAGUGUGUCCAGUGGCGAACCCAGAACAAAAAUUACUGGGGUCCAAUAUAUACUAAUUAUCUAAUUAUUAACUAAUAUAUUAAUUAA
Sequence
(XR_003239881.1):
GUAUACAGCAGCGAAUUUUCAGUUAUCGUCUCCCCACUUUUUUCGGAUAGUUUUUUUUCUCGCCAGCGACAGUGAGCGCCCUUCUUCUCUCGCCGCCCGUGCAGCGGGGGUCGCCCGCGCCGCCGCAAGUUCCUUCCAGGCGGGGAUAGGCGGCUGCGAGGUAACGUGCUACACAACACCGCCCCAAAACAUUUUCCCCUGUUGGACGGCGACUUGGGCGCUCCAUCGACUGCUGGAUGGCACCAUGUGGUUGAGGCCCGUGGCACCGUCGGCUGCCCCUCUGUCGCCGACAUCCAUCCCAUCGCCGGAUCUAGGAGAGCUUCGCCCGAAUCCUCUUCUGAUUCUUGCGUGUCGGUGGUGGGUGGAGAGCAGCGGUACCAACGACAUUUGAAGCACAGAGGGUGGCAGGAUUCGGAGAGGAGGCUACGGAUCUGGGGGUCCGAUGGGUCGUUCUCCCUCCUCCCUAAAGCGGUGGCGAAGGAUGUCAGUAAAUUGUCGUUGGCGUCAUGCGCGGCAGGUCAGCGCCGCCAAGAAAUACAGGAGGUCCGUGUAGCGGUUGUAGUCAAUUGAAAUCUAUUUCAGGUACAGCUCGUUAGUUCCUAUAUAUCAACUAGUAGCGUUAUAUGGUAUCAGUAGUUUUUUUAUCAUCCUGUAUUGGAUUGCACCGUCGUUUUGAUUUUGGAUGAGAUAUGUGCCUGUGUUGGCUGUGGGGAUGCGGUUUUGUUAAGAUUGGGUAGUAACCACUGAUUAAUGCCUGCCGACGGAAGGGCAUGCAUUUCAAUUGGCGGCCAACGUGAACCUUUGUUUCACAGCCAACUUCAUUCCCAGCCAACGGGAUGAAGUUAAUAUAUGUCAGGUACCUAACAGAACUAAUCUAUUUGAUGUUUUGUCAGGAACCUAACAGAACUAAUCUAUUCAUGUCUUUUGUAUCCGUGUAUUGAGUGGACACAUCCAACCUAAACACAUUAGAAGUUGUUUGGUGGAUGGCUUCGCUUGGUGCUAUAAGUGUAUAUGUGAUGAAUCAUGCAUGCAGGGCUGUUCUUAGCUUCUGAAAACAAUAGAAGAACUAGGAUGAUCUGUAGAUGUGCACAUGUGGCCUAGAGUCAGCUUAGGUGUCGCAUUCUCUGACAAACGAUUGCUUUGGUAAACCAAGACUGGUGUUUUUUAUUAGUACUAAUUUGGUUUGUUUGAUUAGUUGUAUAUACAAUCAAUUGUUUCCUGUAAAUAAUUUUGACUGAACGUUACAAUGGAAGUUAUUCUAUGUCCUCCAUGGCAUUCAGAUGGUAACUGAAAAUAUAUGAUCGCUGGUAGGAGUAUGUGCUUUCAACUAUGUAGCUUGCAGCAGUUCUCUUGGUAAAAACGAGCCAAAAAUUCUCUAAUAAGCUUAAUCCACACGAUCAACAAUUCAUAAGCCUCUUGAUCAACGUUUUGCCACUUAUCCCUGAUAUGUACCACCAAAUGCCCAUUUAGAUUUCCCAUGAGCUUGCACUUGCAUUAAUUUUUGGCUUUUCAGCCUGCAAGCAUCACCAUGUCCUGUGCAAUGCUCAGUUGCUCAUAGCCUCAUACUAUGAGUCAAUCCACUAAGGCAUGCCUACUCAUAGUGCAUAUAUAUGGCAAAUUUUGGUCUUGCAGGAGCACAAUGUAACCCGGUGGACUCGAAGAUGAUGAAAUGCAUCAUGCGGUGACCUGGGAAACAUUGUCACUAGCGCCGGAGCGGCCAUGCUUGAUCCUGGGCUGCCCAUCCUGAUUCCUAAUGCUACCGCCACACAGUCCUGUUCUAAGCUGGUUGGUUGGCGAGCCAGCCGCCUCCACUACAACAUUCGUCCAUCAAAGACGAUGGAUCCCGCGGUGAAGAGGAGGAUCUGCUGAUCUGAAUUUCUUUGAUGAUUUUUGUUGGAGUGUUUAUAUCCUUUGUAACUUUUUUACUUUUGAGUUUAAGCAUGUAAUUUGUUUAUUGUAUAGUGUGUCCAGUGGCGAACCCAGAACAAAAAUUACUGGGGUCCAAUAUAUACUAAUUAUCUAAUUAUUAACUAAUAUAUUAAUUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
25.41%
ME_num:
MEP:
60.77%
HE_num:
HEP:
13.62%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.87
Avg Expression:
15.29
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.30436675704064 | 0.0458143313643629 |