Chr:
Chr7
Start:
14592896
End:
14599129
Strand:
-
Ref_name:
LOC107278340
Sequence
(XR_001547502.2):
CGUCAGUCCGCUAAUUAAUCCUGGACAGCAACCUGCGGACUUGGAGAUAAGAGGAGGCUGCGGCGGAAGGCACUGUACUGCGGGGAGCCGGGGCAGUAGUACAAGCUGUACUCUUGGCUUCGGGCAAAGCCAGUGUAGUACGUACUUCACGUACUCCGAGUCUUUUCCCAGCGAUGGAGCAGCAAAAAGUACGACGCCAAUCGAUGCCAUCCUCCUCCCGACCCCGUGGAAAAGAGUCUAUAAUACGUGAGCGCUUUGCCUGCGUUUUGGCCAGGCAAACGCAGCCUCCAUCAUUAAUCCGGUCAUCAGCAAAGGUUAAUUAGGCCCGGAGAUUUUUGCAGCUGAGAGCGGGGAGGGAACGAAUCGGAAUCGGCAUCGUUAUCGGCAUCGGCAGCGGCGAUGGAGACAGAGAGAUGGAACGCGAGGGAGUUCCUACAGGGGCGAGCUGGGAACACACGGUGAUGAGGCGGUCUGGUCUUUCGUGUGUUCUCAGGUCGCCCCUGCCGGGACUCUCUGGUUGAUUAUGUAUAUGUUGAUUAUUUUCUCUUGCCAAAAGGUCUCCUAAAUGGCGCGGUGUAGAAAUGAUUGAGAGGACCAAAAAGGGAGAGGAUUUGCGCGGGCUGGAUUUGGACUGAAGGACAUCACAACUUGUGACAACUGCCACGACUUCAUACAAACUCCAUUUUGGGCAUGUAAGUACAAAUGGAUCCAUCCUCAUGUCCAUAUCUAUUCUGGAGAGUCUGCAAUCAUCAUUUUACUACAAAGACUUUUUUAUGUCCACGGUGCUACGUCACCUUAUUUGGGUCGAAUAUGAUGCGUACCAAGUUGAGUCCGUUAGAGACACGCCUUAUAGUUAGAGGACAACCCCAACUCAUUCUCCACCUAUAUAUUUCCCUUAGCCGCCAUAGAUCAACUCGGGUUUUGUUUAGAUCAAAGUUUAGUGUCGCUAUUUUGCCGUGUAAUCUUGUGAUCAAUUAGAUUGCCGUUUUGCUCGUUACGGAACCCCACCUUUGACACUCUUGUUGAUUUAAUCCUACAUCUUUAUUCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
66.46%
ME_num:
MEP:
28.46%
HE_num:
HEP:
4.88%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.93
Avg Expression:
9.49
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.35855358035421 | 0.0233125888200861 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.04617662425622 | 0.0236562018382564 |
| 3 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.49828697669172 | 2.35452353549888e-28 |
| 4 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.61233149968223 | 6.41319043853606e-07 |