Chr:
Chr8
Start:
3832561
End:
3835099
Strand:
+
Ref_name:
LOC107278335
Sequence
(XR_001548227.2):
AUCAACGAAUCCUAACAAAAUUCCGUCUGGAAUUUGCCCUAAGCAAUAUCCGAUUCGUCUCGAGUCUCGUCUCAACAAAAAGGAAUUAAUCUCCCGGAGGUCUCCUCGUCCCCUUCCCCGCCGCGAGCAGCGCCUCCCAAGUCGCGCCGUCCGGAAACUCGAUCUCAUCGCCGCGUCUUCGGCCGCUACUCCGAUCCGUCGCCAUCGGAUCUCCUCCCCACCUGCACCACCGCCGCCAAUAAGUGCACAUCAUCCCCCAACAAGGUAGACAUUACUUCCAUCCAAGGAUAUGCCUCGACUGGGGGAUCCGGAUGCAGAUUUGAUACGAAGAGUUCUUUGGGAGAUUGGAUAUAUCUACUGCAUCUAUAUUAAUCGGGAUAAGACCUCCCUAUUUUUAUGCUCCCAAAGUUCACGCACACUCUGGCUUGCUACACUAGGAGGAUGUCUUUUUUUGACAUCGAACACUAUAUUUUUAGUACUAGACAAGAUUGAUUCGCCCAAUGCACGGACAUGGAGUAGAAGAAGAUUGUAAGAUAUCUGAUGAUGUAUGCAACUUUUGGUCAUAAACUUGAUAUAUGACAUCAUCAUAUUCUAGCCUAGGAUCUUGAAAUUUGAAGCUUGUGUGUAUACAAAUGUACUCUGCAUAUAAGGCCUUGAUAUAUGCAUAAUAAAUGAAGUUUCAAUUUGAUUGGAUAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.61%
ME_num:
MEP:
14.84%
HE_num:
HEP:
84.35%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.53
Avg Expression:
17.72
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.0618047564037 | 0.000328124101230551 |
| 2 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -1.88051339858975 | 0.000193263674719003 |
| 3 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.13880161702795 | 0.00300039079579194 |
| 4 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.09724504719439 | 0.000419318398526822 |