RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC107278331

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr4

Start:

27012092

End:

27015763

Strand:

+

Ref_name:

LOC107278331

Sequence
(XR_001545162.2):

UAUCAUAACUGUAUCGAAUUGUAGAAUCGGAUUUUAGGAUCAUGAUCAUAUCAGGUUAAAGUACAUAUUUUCACAUAUAAUUUGUUAGACAUUAUAUUAAAAACCGAAGCCCAUAACAUUGAUUUUUGAUAAAUUUAAUUUUUUGAAAACUUGAAUAGACUUAUUAACAUUAUUUUCAAUUAAAUGAAACUUAAAUAAUAUAUACAUAUCGUAAAACCAGGAUCCUAUAUAAGAUUCUAACGAUCCCGUAAAAUCGUGUGGAACUCGCACUAAUUUAAAAUAGUAUGAAAAGUAGGAUACAUGGUAAGAUCAUUAUCUUAACAGCUUGCCGAAGAAAAGAGAGGGACGAUAAUCUCUUUAUCUAGCAGUGACUUUCGGACUGGCUAUAUUAUUUGGUCGUCCAAACGUUGUUAGUAUACAUGACAACGCUGGAUUGCUGGAAGCAAUUAAUCGCCUUGUUGCAGAGGAUUCACCAAGCAGCCGUUCAACCUGCUUUCCAUCUCAACCGUCCAAAACCAAGUCUUUAUUUGGUAAUCAGGGAAAUGGAAAGGAAAAGGAGCACCGAAAGUCAAUGGAAGCUCUAGCCUGCAGUGUACUGAGCGUUGCGGUUGAAUUGAAUUGAGCUUAGCUUGCAAACCUCUAUAAUUGUCUGCUCCGUCAUGCCUACUACGUGGUGGUCACAUGGAGGCUCAGAUAAUAAUAUCAACUUCAAAAAUGAGUAAGCAGCAGCAUUAUAUAUGUAUACAGUAUACCCAGAUGUUCAUGUUCCUACCUACUAGUAGUACUGAUCAAUCAGCCAAACAACAACUACCAGAUACAUGUAGCAGCUCAUUCUCCAGUUCUAUACAGUUGAUAAUUCAUAAGUGGAAAGGUUUGAGCUAUUGGAGAACAACAUCAUGUGUGAUGAUUCCUAUGCUCGUUUCAGCUUCCAUCCAUCCAUCAAAACUCAACGAUGGCUGUGUUUAGUUCAGCGCAAAGUUUAGAUUUUGGUUGAAAUUAGAGAUGAUGUGACUGAAAAGUUACAUGUGUAUGACAUAUUGAUGUGAUGGAAAAUGACUGAAGUUUGGAUCCAAACUUUGGAUCUAAACACAGCCAUGAAGUACAGUAUAUGGCUGGCUGGCUGCUGUAUGGCCUCCAGCCCUUCCUUUCCAUUUAUUCCUCGUUUGCAAUUCAUUCCGUCUGGCCGUUUGGGUGCUAAACCCAGCAGUAGCAUGGCAAAUUCUGGCCAAGGGACAGAGCAACAGAAACUAACAGGGAAUUGGUUAUUGCAGGACGCAUCCCUCUCCCUCUAUUCCCAAAUGAGUUCCUCCUGUCCAUGUGGGCGCGAUGGAAUGAUAGGUGCUACGCGAAAGCGAGGCACUUGCUUACGAGGGCCGUAAUGAUUAGCGGGUUAGCAUGCACUCGAACGGCGAAACACGCAGUUCCUCACUCGCUCGCGGCCAGGUAUUUUUGGAGCGGCGUGCUAGCCGUAGCCUCCCGUUUCUUUCUUUCCAAUUUUUUUUUGCUGGGUUUGCAUGAUGGAUCAUGGCGGAAAGAUGGUGGCCAGGAGUAUCUAGGGAGGUAUAUAGGGAGGGCCGGGGGAGACUGGCUUUACAGUGUGUCUGGCUGAUUACUGAUAUGGGCGAAUUCGAGAGGACAGUUAUCCAGCUUGAGGAUGUUUCAGAAUUUCAGAAUAUCAAGUGGCAGUUUACCAACGUUGCUACUUCCCCCCUUUCACAAUGUAAGUCAUUUUAGUAUUUUCCACAUUCAUAUUGAUGUGUCUAGAUUCAUUCGCAUCAAUAUGAACGUGGAAAAUGCUAAAAUGACUUACAUUGUGAAACGGAAGGAGUAUCUGUAAGUGGGUCUAGAUUCAUUCGCAUCAAUAUAAAUGUGAAAAAUGAUAAAAUGACUUACAUUGUGAAACGGAGGGAGUAUCUGUAAGUGGGUCGGGUCGGAGAGGUGACAGGAGUGACACCGACGGCGAAGGCGGCUAUCUCCCUCGUCGACUCGUCGUCCCUCCACCUCGCGCGCUCUCGCUGCCUCGGCCACUUGACGAAGAGAAGGGGUCAAUCGCAGAUCACACCGUGCAGUAUAUAACUGAUUUCCGUUUACCCACUGGAGGAGAUAAGCGAUCGAUUGGAUCGGUAGGUCACCAGCAAAUCAGCGAUGAAGUCACUCCAUGAGGCGAGGCGUAUGUGCUGCAUGACACAUCGGCACGGAGUGGUUGCUGUGGGUGAUGCAACUCUUUUUAGGUUUUACUCGUGUCAUCAAUUUCAUUUUCCGUUCGGGGAGGUAUGCAUGCGUGUUCCGGAGAAGACGCAUGAUAUGCAUAAAGACGUCGCUGUUCACUGUUUUGUAGUAGUUUGUACCGUCUUCUGCUUCGUCUGUACUCUGUAUAUAUUGGAGCUCAAAAUAUUCCCGGGCUCUGAAUACACCAAGCUGCGGCCUGCGAGCACUGCAGACUCAUGCUACAUUGUAUUAGGAUUUGAAAAUACAAGAUAAAGAAGUAAUCAAACUGGGUGUUUGGUCUAGUGGUAUGAUUCUCGCUUCGGGUGCGAGAGGUCGCGAGUUCGAUUCUCGCAACACCCCCUCGAUCAGUGAUCAUGGUGUUUUUUGCUGUUGUCGCAUUGCUUUCAUUAAUUCGGUCAGUUUGUGAGGCCCAAAGCACACAACCAUUUCGAUAAGGCUCUGCCGACUGGCCACUGUCCCAAGUGGACCAUCCGACACUGAUUAAACCUGCAAGAAGUGGUGGGUGCUAAACUGAUAAUCUAAUGCACUGCUAACUCUGCAACAUGUCGAUACUAGUACUUCGUUUUGCACCUUUGGCGUUUUCACUUUCACUUUUACACCGAUUCCGUCUGCUCUUCUUGAACGGGGUGGUCCAGUCAAUGGUAAUUGGUAAAUCUAAGCAUUCAGGAAAGGAUUACCGCCCUUAGUUAGAAGUUGGAACACCUUCUCGCCAGCAGUUUCGUCUGCUUGCUUACAGGAAACGGGCCGGAUUCUGGUGGAGGCAUGCGUGAAGCCAUACAGAAUCGGUCUGUUCAGGGCAUCGUUGAUCUGCCUUGACAAAGCUUUGAUUUCCACGCCAUCUUGUUCCCAUCAGCAUCUGGAACACGGAACAGCCACAGCCCACAAGUUACGAGCAUGAAAGGUUAGGUUAGUCUGUUUAAUUUUCUUCCAGAAUCCGAUGGUUUGGUAGCUUCAGGUUGACCGUUUCACCUCCAGUAGCAUUCUCUUUUGGAUUGGCCAUUGUGUAUACACAGGGAUAAAAAAGAAGGUUACGAACUGCCUCAGUAAAUACUUUACUCCCUUUGGAAACCAGGGUUCAACUAUGUAAGGCCCUCUAGUGCCAAUUCAGUCUACCGAAAUGUCUUACAAACUAUACCAUUCAAAACUUGUAAAUAACACGAAGUGUAGUCUAUACACAUGAAUCAGAAAGCAUCACGUGGAAGCUAUAAGUGGGGGCAAA

Sequence
(XR_003242015.1):

UUAUCAUAACUGUAUCGAAUUGUAGAAUCGGAUUUUAGGAUCAUGAUCAUAUCAGGUUAAAGUACAUAUUUUCACAUAUAAUUUGUUAGACAUUAUAUUAAAAACCGAAGCCCAUAACAUUGAUUUUUGAUAAAUUUAAUUUUUUGAAAACUUGAAUAGACUUAUUAACAUUAUUUUCAAUUAAAUGAAACUUAAAUAAUAUAUACAUAUCGUAAAACCAGGAUCCUAUAUAAGAUUCUAACGAUCCCGUAAAAUCGUGUGGAACUCGCACUAAUUUAAAAUAGUAUGAAAAGUAGGAUACAUGGUAAGAUCAUUAUCUUAACAGCUUGCCGAAGAAAAGAGAGGGACGAUAAUCUCUUUAUCUAGCAGUGACUUUCGGACUGGCUAUAUUAUUUGGUCGUCCAAACGUUGUUAGUAUACAUGACAACGCUGGAUUGCUGGAAGCAAUUAAUCGCCUUGUUGCAGAGGAUUCACCAAGCAGCCGUUCAACCUGCUUUCCAUCUCAACCGUCCAAAACCAAGUCUUUAUUUGGUAAUCAGGGAAAUGGAAAGGAAAAGGAGCACCGAAAGUCAAUGGAAGCUCUAGCCUGCAGUGUACUGAGCGUUGCGGUUGAAUUGAAUUGAGCUUAGCUUGCAAACCUCUAUAAUUGUCUGCUCCGUCAUGCCUACUACGUGGUGGUCACAUGGAGGCUCAGAUAAUAAUAUCAACUUCAAAAAUGAGUAAGCAGCAGCAUUAUAUAUGUAUACAGUAUACCCAGAUGUUCAUGUUCCUACCUACUAGUAGUACUGAUCAAUCAGCCAAACAACAACUACCAGAUACAUGUAGCAGCUCAUUCUCCAGUUCUAUACAGUUGAUAAUUCAUAAGUGGAAAGGUUUGAGCUAUUGGAGAACAACAUCAUGUGUGAUGAUUCCUAUGCUCGUUUCAGCUUCCAUCCAUCCAUCAAAACUCAACGAUGGCUGUGUUUAGUUCAGCGCAAAGUUUAGAUUUUGGUUGAAAUUAGAGAUGAUGUGACUGAAAAGUUACAUGUGUAUGACAUAUUGAUGUGAUGGAAAAUGACUGAAGUUUGGAUCCAAACUUUGGAUCUAAACACAGCCAUGAAGUACAGUAUAUGGCUGGCUGGCUGCUGUAUGGCCUCCAGCCCUUCCUUUCCAUUUAUUCCUCGUUUGCAAUUCAUUCCGUCUGGCCGUUUGGGUGCUAAACCCAGCAGUAGCAUGGCAAAUUCUGGCCAAGGGACAGAGCAACAGAAACUAACAGGGAAUUGGUUAUUGCAGGACGCAUCCCUCUCCCUCUAUUCCCAAAUGAGUUCCUCCUGUCCAUGUGGGCGCGAUGGAAUGAUAGGUGCUACGCGAAAGCGAGGCACUUGCUUACGAGGGCCGUAAUGAUUAGCGGGUUAGCAUGCACUCGAACGGCGAAACACGCAGUUCCUCACUCGCUCGCGGCCAGGUAUUUUUGGAGCGGCGUGCUAGCCGUAGCCUCCCGUUUCUUUCUUUCCAAUUUUUUUUUGCUGGGUUUGCAUGAUGGAUCAUGGCGGAAAGAUGGGUACGGAUUGCUUCCUCUCGCUCUCUCUUUUUUUGCCUGUGGUGUCUUGCUGCCUGUACUAUCUGCUGUGCCUGUUACUUUUGACCACUUUAAUUUACGCACGCACUGUCACCACACAGUGGCCAGGAGUAUCUAGGGAGGUAUAUAGGGAGGGCCGGGGGAGACUGGCUUUACAGUGUGUCUGGCUGAUUACUGAUAUGGGCGAAUUCGAGAGGACAGUUAUCCAGCUUGAGGAUGUUUCAGAAUUUCAGAAUAUCAAGUGGCAGUUUACCAACGUUGCUACUUCCCCCCUUUCACAAUGUAAGUCAUUUUAGUAUUUUCCACAUUCAUAUUGAUGUGUCUAGAUUCAUUCGCAUCAAUAUGAACGUGGAAAAUGCUAAAAUGACUUACAUUGUGAAACGGAAGGAGUAUCUGUAAGUGGGUCUAGAUUCAUUCGCAUCAAUAUAAAUGUGAAAAAUGAUAAAAUGACUUACAUUGUGAAACGGAGGGAGUAUCUGUAAGUGGGUCGGGUCGGAGAGGUGACAGGAGUGACACCGACGGCGAAGGCGGCUAUCUCCCUCGUCGACUCGUCGUCCCUCCACCUCGCGCGCUCUCGCUGCCUCGGCCACUUGACGAAGAGAAGGGGUCAAUCGCAGAUCACACCGUGCAGUAUAUAACUGAUUUCCGUUUACCCACUGGAGGAGAUAAGCGAUCGAUUGGAUCGGUAGGUCACCAGCAAAUCAGCGAUGAAGUCACUCCAUGAGGCGAGGCGUAUGUGCUGCAUGACACAUCGGCACGGAGUGGUUGCUGUGGGUGAUGCAACUCUUUUUAGGUUUUACUCGUGUCAUCAAUUUCAUUUUCCGUUCGGGGAGGUAUGCAUGCGUGUUCCGGAGAAGACGCAUGAUAUGCAUAAAGACGUCGCUGUUCACUGUUUUGUAGUAGUUUGUACCGUCUUCUGCUUCGUCUGUACUCUGUAUAUAUUGGAGCUCAAAAUAUUCCCGGGCUCUGAAUACACCAAGCUGCGGCCUGCGAGCACUGCAGACUCAUGCUACAUUGUAUUAGGAUUUGAAAAUACAAGAUAAAGAAGUAAUCAAACUGGGUGUUUGGUCUAGUGGUAUGAUUCUCGCUUCGGGUGCGAGAGGUCGCGAGUUCGAUUCUCGCAACACCCCCUCGAUCAGUGAUCAUGGUGUUUUUUGCUGUUGUCGCAUUGCUUUCAUUAAUUCGGUCAGUUUGUGAGGCCCAAAGCACACAACCAUUUCGAUAAGGCUCUGCCGACUGGCCACUGUCCCAAGUGGACCAUCCGACACUGAUUAAACCUGCAAGAAGUGGUGGGUGCUAAACUGAUAAUCUAAUGCACUGCUAACUCUGCAACAUGUCGAUACUAGUACUUCGUUUUGCACCUUUGGCGUUUUCACUUUCACUUUUACACCGAUUCCGUCUGCUCUUCUUGAACGGGGUGGUCCAGUCAAUGGUAAUUGGUAAAUCUAAGCAUUCAGGAAAGGAUUACCGCCCUUAGUUAGAAGUUGGAACACCUUCUCGCCAGCAGUUUCGUCUGCUUGCUUACAGGAAACGGGCCGGAUUCUGGUGGAGGCAUGCGUGAAGCCAUACAGAAUCGGUCUGUUCAGGGCAUCGUUGAUCUGCCUUGACAAAGCUUUGAUUUCCACGCCAUCUUGUUCCCAUCAGCAUCUGGAACACGGAACAGCCACAGCCCACAAGUUACGAGCAUGAAAGGUUAGGUUAGUCUGUUUAAUUUUCUUCCAGAAUCCGAUGGUUUGGUAGCUUCAGGUUGACCGUUUCACCUCCAGUAGCAUUCUCUUUUGGAUUGGCCAUUGUGUAUACACAGGGAUAAAAAAGAAGGUUACGAACUGCCUCAGUAAAUACUUUACUCCCUUUGGAAACCAGGGUUCAACUAUGUAAGGCCCUCUAGUGCCAAUUCAGUCUACCGAAAUGUCUUACAAACUAUACCAUUCAAAACUUGUAAAUAACACGAAGUGUAGUCUAUACACAUGAAUCAGAAAGCAUCACGUGGAAGCUAUAAGUGGGGGCAAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

113

LEP:

22.97%

ME_num:

378

MEP:

76.83%

HE_num:

0

HEP:

0.0%


Warning: Undefined variable $ncRNA_type in /home/www/html/RiceNCexp/browse_detail_info.php on line 222

Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

anther

Tau :

0.71

Avg Expression:

2.66

Tip: OSA-LNC107278331 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN2.030790606672660.00195015014108544
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1.655490006033850.0114685054258973
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA2.351087669496730.00061968007291398
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN1.669901147560040.0280336334852357
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA1.868174166426180.00948335065338938
6Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA2.098420103981040.00195610917544198
7Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN1.674579195026030.031419227130089
8Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min"2.539922567635530.0310622169799176
9Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day"-1.954156806147310.000565619413856323
10Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days"-1.358856969739110.0236215357191235
11Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days"-2.573767347691344.58843659163225e-11
12Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA1.665113999459530.0220723842403347
13Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"2.614564466465440.0117976426086425
14Baldo // root // control--/--Baldo // root // 100 mM NaCl1.079886942582060.0146956344339644
15Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA2.091366229444320.000481708220257288
16Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN1.91065589282780.00434771024156925
17Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae1.682870719216680.00146509639978204
18Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA1.41924437529360.0234687709211638