Chr:
Chr8
Start:
26803013
End:
26803894
Strand:
+
Ref_name:
LOC107278328
Sequence
(XR_001548220.2):
ACUGCAAUGAGCUUAGCUAGCAAUUAGCCAUGCAUAUGCACAGAAAAAACACAGAAUUAAUGCAUGAGAAGAGGGGGGGGGGGGGAAGUUAAUUUCUGGAGAUGGAAGAGAGCAAGGCUUGCAUGGUGAUAAGGGUGUAGCUCUGGUAGCCAAGGAUGACUUGCCUGUGUCCUUGUGUAGAGGAUCAUUCAGAAAAUGAGCCUUGAACUGGUUCAUAGGCAGUCUCCUUGGCUAGUCUGAGUCGCUCUUAUCACUCAUGUUAGGCUUGCAUCUCGUUGAUCGAUAUGUAAUUAACUACGUUUUCUUCAGAAGGAAAAGUUCUAUUGGUAGAACAGAUAUGAAAACAGACCAGCUUGGCAAAGAACACAAAGAUCAAAUAUUUCAGAGAAUCGACGAACACAGGCGCGGACAAUUGCAAUGUGAAACCUGAUAAUUAGUUUUAAUUUUGCCAGCAAUGCGGAGCAUAUGCAAUUUGUAAAUUGAUGGCAAUGCAAGUCUGAACUUUUUUCAUGUAGUUGAUAUUUUUCUACUGUCUGUACUUGGAGCUGUUCAUGUUCAGUGUUUGUCGGACGUUCUUGAGAGCCUAGUUAUUUUUGUCAUUUUAAUCCUGUGCUAUUUAUGAUUUUUUUAACCCAUCUUGUUAAAUUAUGGCUAUAUCUGAAACUGUGAGUUAGUACU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
39.43%
ME_num:
MEP:
31.1%
HE_num:
HEP:
29.27%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.84
Avg Expression:
13.09
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.89013324447755 | 0.000964643673279531 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 5.9728736408592 | 4.48457414011651e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.17629267633536 | 0.00884314013825737 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 5.02578898912846 | 0.000356290442671812 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 4.80399317779359 | 5.95922251345648e-10 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | 1.88232137165724 | 0.00255583459790907 |
| 7 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -2.23365241863714 | 8.45237748263222e-06 |
| 8 | 9311 // leaf // control--/--9311 // leaf // salt | 3.30072136547936 | 0.000935866889127663 |
| 9 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 1.0689058387878 | 0.0244275002365505 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 5.59248707342405 | 9.25528245553414e-05 |
| 11 | Nipponbare // leaf // Drought;Long_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.95288623237517 | 3.72497895381242e-05 |
| 12 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 3.50514993690004 | 0.00029883431117086 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.08028310897516 | 0.0265200911169128 |
| 14 | 9L136 // leaf // control--/--9L136 // leaf // salt | 4.33870502718822 | 1.52608070606443e-05 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.66109291829509 | 0.0199966718922029 |