Chr:
Chr5
Start:
12050862
End:
12052759
Strand:
+
Ref_name:
LOC107278310
Sequence
(XR_001545876.2):
CCCCCCCUCCCCCUAGCCGUCAUUUGGUACCCUGGGGCGCCCACCUCCCCCUCUGGUCGACCUCCCCCAUGCCUGCCCUGCUGCAGACCUGGGAAGAAGAAGGGAAGGAGAAGAAAGGGAAAGAAGGAAGCGGAGGAAAUCGAGGUGAAGAUGGAAAUGUGGGGUUUGAUUACCCGCCGCCCAUGGAGGCCUAGUCUUUUCAGGUACUUGCUGUGACGUAUUUGCAUGAAGGGAUGGGAUUAGCUACAUUGUCGCACGACAUGAUCUCACUUAGUCAUGAUUAUUGUAAUAUGUUGAUAAGAUUACUUAGUCAUUGAUUAGCUCCUUUUUCAAGUCUAUCCCUAUAUGUCAGUCAAUUGUUGUAUCAUUACCUUAAUCUAUAUGUUGAUGCUUCCAAAAUGUUUUCUUGUCUAAGGUAGUUGUUGCCGAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
28.25%
ME_num:
MEP:
27.64%
HE_num:
HEP:
43.9%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_meristematic_zone
Tau :
0.75
Avg Expression:
49.55
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.23775723423297 | 2.71692599792185e-18 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.47812862111368 | 3.34872640698417e-25 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.50321613417301 | 2.36211272793908e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.15153636081819 | 0.041691544539311 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.85784651356277 | 3.8850808000079e-38 |
| 6 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 8_days_after_shift | 2.1224229363456 | 0.00393344555137497 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.02124125465875 | 1.47091699987165e-17 |
| 8 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 4.55057272449483 | 0.0177582160548964 |
| 9 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.08235119809488 | 0.00209553090606893 |
| 10 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 3.01048641236265 | 0.00206100893190127 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.46025756234016 | 1.08369187730648e-22 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.80413018514192 | 7.5021831736764e-14 |