Chr:
Chr3
Start:
3487912
End:
3492479
Strand:
+
Ref_name:
LOC107278303
Sequence
(XR_001544610.2):
UUAGUUCUUCGGCUUCGGCACAAAUCGGCGGGCGACACUGCCAGCGUGAAGCUUCUGCAGGUAGGACGAUGUUUGGCCGUGCAGCCAGCCGUCCGUGCUCCAUCCACCAUCACCAUGCAUCGAUAUAUAUCUUCCAUCUCGCUCACUGCGGUUAAAAAGAUGAACUCAACAUUUUGCGGAUACCUGGUGUUGCAGUCUGGCUAUGACUUCCAAAUCUACUUAAUUCCAUGAGCUCUUUGAGUAUGUCAUCACAUCCACCAAUACAACCUAUAACAGCAUGAAAUAUGUCCGAAUCACCUUAGUAUGUAACCAAACAAAAGAUGUGUACGUGUUGAGAGGAAAGAAGGAUUUGUUUUUUGGUCAUAUAAGUUUUAACUGAAAAACUAAAGUGAGUAUGGAACUUCAAUUGAAAUAGGAGAGUAUACCGAGGUGAUCGACAUCAAAAUUUGGUGGAAUAUCCCUUCGCCGAAACUUAAAUUGAAUCUUAUAAACCGGACCUGUAAAUUUAACAGAUUAUCAAUAUUCAAAGGAGAAUCAGCAAAGGAACAGUCCAUCAGUGAAAAUCAUUGAUCAUACUAGUGGUACAAUUUCAAUAAUUGGGGAACUAAAUUAUUCACCUGGAGCACAGGUAGGACAAACUUGAUCAGUCACAGCAGCCCCUGAAAGAGAUCGUGGGAGCCAAACUACAUUUCUACACUGAAAGUUCAGGAAGACUAUUAAUAUCAAAAUUUUCGUCGGAGUUCAAUUAUUUUGGCUGCAUUAUUAGUUCCAUAUGCUCUUUUCUGGCAAGAUUAAUGAAUUGUUUCUUAUUUCCUUUUUUACUAACAAGAGGUCUGGUAACUAAGCAAAGCACACAUGUUACUCACUUGAGGGAAGCCCCGACACCCAACCAUAAAUUCGCCAGUCUGAGGAAAGAAAAGCAAAGCUCAAGCAUGGACAUAGUGCGACACUUCCAAUAUGCCUAAGCUUCAGAACCAUUUCAAGAAAGAAAAGAUGUAUGGGAAGAUAAUUUUACCGGCCUUUGCUUCAGAAACAUUUCAGAUUCAUUGCAUGCAGCACAUGGUCUCACAGUUUCUAUGGAGUUCUGUGUCUCAUUGACCGGUCUACUUGACCUAGAUCAAAAGUCAAAGUGAAGCUAGAAAUUUGUAGCAAUGAAAGAAGAAAGCCAAAUGGAUCCAAUCAAACCUUGCAAAGAAUGUUCCCAUUGCAUCAAAGAGUUUCACCUUGUUUGCCCUUGCCUGCAUUAUACCAAUGAUAAGUGGUUAACUACUAGAUAUAAACUCAGAGGUCAGAGCAAUUCAAUAGAUGAUGAACAGUUUCUAUGCUUCACUUCCUGCGCCAUAUUGUUACUUUUAUACAUACAUAAAAAAGAACUUACAUCAAGAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
29.27%
ME_num:
MEP:
56.3%
HE_num:
HEP:
14.23%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.78
Avg Expression:
11.52
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h | -1.38488471407746 | 0.0227413618524813 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.37985529620987 | 6.85791785322342e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.0719198951715 | 0.00227758474405711 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.50445518888958 | 0.0177425652151795 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.55845665216471 | 4.88949555068223e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.21508096968007 | 0.000152088882020789 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.17373178796608 | 0.0407511439858445 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.36264199766833 | 0.00830038811712239 |