Chr:
Chr5
Start:
20827842
End:
20829566
Strand:
+
Ref_name:
LOC107278171
Sequence
(XR_001545910.2):
GUUUUGAUAGUUUAGGACCCCGUUGCAUCUGGUUUUUUGGUUGAAGGAUGAAAAUCGGAUUUGUUGACAAGUUAAGGGACCUCAGAUGAAAUUAUUCCUGUGAAAUAUGAUUCCCGCAUACGAGUACGAGAUACGAUCUCAUCCUUUGGUAAAUGAUCUUCUUGUGAGAUGUUUAAGAUCAUCAGAUUUUUUUUUGUUUCCUUAGAUCAAAGAGAAGAUCACGAUCACGGCGGGCAGUGACAACAAACGACUAGGCCCACGUUAGCCCAUCUGGCACAGCACAGCCCAUACGACGACCACACAUCAAAAGGAAAAAGUACACCGAAGGUCCCUCAAUUUGUCAUCGAGUUACAAAAUCGUCCUCCAACCGCAAAACCAGAUAUCCGACGUCCCUUAACUAAUCAAAACCGGUUACAAUAGGUCUUCCAGUGAUUUUGACCCGGUUUUAUCCUACAUGGCGGCUGAAUCAGCAUGAGACCCACGUGGGACCCAUAUAUCAGCCUGCCACGUCAUCUCUCUCUCCCAUCUUCCUCCUCCUCUCACUCUCUUACUCUUCUCUUCUCUUCUCAUGUUCUCUGGGCAAGCCGGGGAGGAGGCCGCCAGGGUGAGGCCGCUGGGGAGGAGCACGUGGGGAGAGCGAAGGAGGAGCUUGGAGAGGGCUGGCUGUCUCCUCGUCCGACGCGAGGCGCCGCGGUGGCGGCAAGCGAUGGAGGGCGGUGGGCGGCAGGAGUGGAGCUGGGCGGCGGCGGCGGCUGGCGGGAGAGGGCGGCCGCCAUGGCCUGCCGCAGAGGUGGCCCGCCACCCACGGAUGAAGCCGAGUCGUGGCUCCUCAGGGUGGCGACGUCUCGCGCUGUCGCGCAAGCAUGAAGGCAGCAAAUCUCCUAUGCUUCAACCCCUUGUCGUUGCUGAAUCUUGUUAUUUCACCAUGCUACUCAUUAGCUAAAUAGCUAGUUCCUGUGAGCUGUUGUUUGUCAAGGUUGGCAUGGUGCACAGUAGCUACUAGCUAGUUCUAGACGAUUUUAAUUUCUUGACGGGGAAUAUUACAGGUGGUGUUUGAAUUUCAUGAAGAUAAAGAUAAAGUGUUUCACGUAAAA
Sequence
(XR_003242272.1):
GGUUUUGAUAGUUUAGGACCCCGUUGCAUCUGGUUUUUUGGUUGAAGGAUGAAAAUCGGAUUUGUUGACAAGUUAAGGGACCUCAGAUGAAAUUAUUCCUGUGAAAUAUGAUUCCCGCAUACGAGUACGAGAUACGAUCUCAUCCUUUGGUAAAUGAUCUUCUUGUGAGAUGUUUAAGAUCAUCAGAUUUUUUUUUGUUUCCUUAGAUCAAAGAGAAGAUCACGAUCACGGCGGGCAGUGACAACAAACGACUAGGCCCACGUUAGCCCAUCUGGCACAGCACAGCCCAUACGACGACCACACAUCAAAAGGAAAAAGUACACCGAAGGUCCCUCAAUUUGUCAUCGAGUUACAAAAUCGUCCUCCAACCGCAAAACCAGAUAUCCGACGUCCCUUAACUAAUCAAAACCGGUUACAAUAGGUCUUCCAGUGAUUUUGACCCGGUUUUAUCCUACAUGGCGGCUGAAUCAGCAUGAGACCCACGUGGGACCCAUAUAUCAGCCUGCCACGUCAUCUCUCUCUCCCAUCUUCCUCCUCCUCUCACUCUCUUACUCUUCUCUUCUCUUCUCAUGUUCUCUGGGCAAGCCGGGGAGGAGGCCGCCAGGGUGAGGCCGCUGGGGAGGAGCACGUGGGGAGAGCGAAGGAGGAGCUUGGAGAGGGCUGGCUGUCUCCUCGUCCGACGCGAGGCGCCGCGGUGGCGGCAAGCGAUGGAGGGCGGUGGGCGGCAGGAGUGGAGCUGGGCGGCGGCGGCGGCUGGCGGGAGAGGGCGGCCGCCAUGGCCUGCCGCAGAGGUGGCCCGCCACCCACGGAUGAAGCCGAGUCGUGGCUCCUCAGGGUGGCGACGUCUCGCGCUGUCGCGCAAGGUUGAUGUGAUGGAAAAUGACUGAAGUUUGGAUCCAAACUUUAGAUCUAAACACAGCCUAUAUGAUGAAGAAGCCGAGAACAGAUCAGAUUAUAGUAGCAGUAUGGAACAGUAGUUGUGAGAUAUCCACCUUCCCUUCCUCCUUUUGACUGAAGUAGCAAGGGACUAUCAGAUUAUGUUAAAAAGUGUGUCACGAGUAUCUAAAAUUUCAUCCAAUUAUUAUUGGAGAAACGAACACAGCCUAUGAUGAAGAAGCCGAUAACAGAUCGAAUUAUAGUAGCAGUAUGGAACAGUAGUUAUGAGAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
65.45%
ME_num:
MEP:
33.74%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.81
Avg Expression:
1.85
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -5.18556140366546 | 0.00721570985331671 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.43281885441057 | 0.00424498187469375 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.66945321024241 | 0.0210182923506184 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.91750930580725 | 0.000883957090766814 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.52497908166715 | 0.00590598619826058 |
| 6 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.32244811632455 | 3.45719606235536e-06 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.53376187661237 | 0.0265854099323371 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.32750490541854 | 0.0277983605293784 |
| 9 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.11457914121014 | 0.0327982175619669 |
| 10 | 9L136 // leaf // control--/--9L136 // leaf // salt | 2.14569938206555 | 0.000536823871444606 |