Chr:
Chr7
Start:
14178416
End:
14179326
Strand:
+
Ref_name:
LOC107278165
Sequence
(XR_001547328.2):
AGCAGCACCUUACAUUCAAGAAUCACCUCUCAACACAAAACUAAGAAACAUAGCAAGAUAACCAGGGAAGGUAGCAUCAGCAACAGGAGGCAAUGGAGGGAAAGAGGACUACCACUUCGAUGGUGAUCAUGUGCCUGGUCAUCUUGAGCCUCACUGUCGACUCCGCCACCGCGGCACAGUGCGGCUGCUGCAUAUCCUCUUAGGCAAAAGCAUGUUGUUUCGGUUGUACUGCUGCUGGUGGCUCCGACUCAGUCUACAAGAACACUUGUUGUUUCCCAUGUAUUCUGGCCGAUUCUGUUGUUGCUAAGAUGGACGAAAUGGGAGUUCUUGCUAAGAUGGACGAAAUGGGAGUUCUUGCUAAGAUGGAAGGACAAGCCUAAAACAACAUGCUUGCAUUGCUACCAGUCUUAAUGCCUAUCAUAAGAAUAUGUUGUUUUGCUUCAAGUUAUGGCCAAGUUAUGUUAAUGUUAUCUUCAAUAAAUUGUUGACCAUAUGGGGCGAUCUAUAGUGGAUCCAUCUGUUGGUCUCAACUCUAUGUAUGUCGUGCAUGUGUGCGCUCACAAGCAUAUUUAAUUUCUCUUGCUGCUUUUAAUAAGGCCAUAGCACUGUCCAUUGUGUCAUCCGAUGGUCUCUGACCUUAGCAAUUUAUUACGACAUGAUUAAUAUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
61.99%
ME_num:
MEP:
10.37%
HE_num:
HEP:
27.44%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.97
Avg Expression:
500.04
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -2.23825911585623 | 0.0318433932748931 |
| 2 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 2.19337926515906 | 4.5870849153671e-05 |
| 3 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | -3.20563369837747 | 6.02380765768484e-07 |
| 4 | 9L136 // leaf // control--/--9L136 // leaf // salt | 3.54571229884574 | 0.00990879057336738 |