Chr:
Chr7
Start:
5592510
End:
5593798
Strand:
-
Ref_name:
LOC107278126
Sequence
(XR_001547343.2):
GGGGGGGGAAGAAAGGGAGGUUGAGAUGUUGGGUUAGUGGGAGACUUGUCAUGUUGUGCCUGUCUCUACUGUUGAAAAUCCUUGUGGUUGACAAAAGCCACCUUUGUUUCAGGCUGUGCGAUAAGAUCGACAUAUCUGAUGCUUCUGUUUAGGUUUUACUGAACCAUGGGCUGCAAUCCCUCCCUUAUUGUUGAUAUUACAGUUAACUCCAAACUGUUGGCCUUGAAAAGCUUGGAAUCCUUAACAGUUCACUAAGCAUAGAAGUUUAUCUUCAAUAUUAUUAAAACAUCUUUUGUUGCUAUGUUUUCAGUUCCUACUCCCAUCAUAAAACCGCCUUAUGAUGUUUGAAAAUUUUUAAGAGUUCUCUAAGCAAAUAAUUCAAUGGAUUGCUUUAGGCUAAAAUGCUGUGCAGUCCUUUAGAUUAGUUUAGAUUCACCUACUAAAUGUUUGCAAGGCUAUAUAAUGAUAUGGAAAUUGCUUUUGCAGGCGUCUGACACUUGCUGCUUCCAAGGAAUUGGUAUGAGAGGAUCCACAUGGUUCUGACAUUGUAUAGAUAUUUUACAUGGCACACCAUCACUCCUACCAAAGGGAACUAAGCAAGUCGUGAGGACACGAUUUUUUUUGCCAUUUGGCAGCACCUGUGGGUUUAAUUGCUUCAUGGCUUCAUGUUAGGUGACAAGAUUAGAGAAGAUGUUGGCAUUCUACGAGAGGAGAUUAAAGAAUGAAGCUGUGUGAUUAGCAUAUAAUCUAAUGCCAUGGCCGGGUGCAGAAUGUUUUAUUUUAUCAAUCAGAUGUGCCAAGAUCAGGUAGUGCAUUAUUUACCUGAUGAAAUAUUUCGAGUUUAUUUCGCUACGUUUGACUCAGGUUGUUCAAGUUUCAAGAUAUAUACUAUCUUUGCUUGGUUAAAAUUAUUGAUAUAUUUUUCUGUAAAGUGGUAACCAAAGUUUGGAUGGAUUUUGAACUAUUAUUUUAGUUGUUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
23.78%
ME_num:
MEP:
74.39%
HE_num:
HEP:
1.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.69
Avg Expression:
4.97
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.22168141720914 | 0.0164631531507005 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.30943179300767 | 0.00364671519214124 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.60987948111824 | 0.00243902692695393 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.44137486631894 | 0.00021564195053236 |
| 5 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.74672760571433 | 2.66106778818837e-07 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.19295143741355 | 0.00681848699414646 |
| 7 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.31078087507343 | 0.0206719663283507 |