Chr:
Chr2
Start:
14019173
End:
14023430
Strand:
-
Ref_name:
LOC107278108
Sequence
(XR_001543518.2):
GUUGUCGUAUGUGGCGGCCUCUGCCUGCUCGCCAGCUCCGCCACAAAGCCGUUUAAGCAGAUUCUCUUUCCUUACUCAAUAUUCAGGAAACAUUCGUUCUUAUGAAUCAAAGACAACAAUCUUUUCUCUCUUUUUUUGGUAUUUCGAGAGGAGAAACCAUGCAAACAUAGCAGCAAGACGAACUUGAGAAUGAUGGGUGGGUGAAACGUGUGAGCUCAAAACAAAAUGGCACCAUCCAGAAUCUUAGACUGAAAACAUUCACAAAUCGCUAUAUUUUUUUCCCAGAACGAAGCAUCAACCUUAAAAUGCAAAAUAUCACGCAUAAGCAAGCAGGAGACUCCUUGUUGCUUGCUUGCUUGGUCUUUUCAGCUUCCUUUUCUUCUACUUGUUCCCCACACAGCCACUCCUUUUUUUCCCCGGUGAUUAAAACCGAGGUGUUCUCACGGUCGCGGCAUGAGGCCUCGACGGCGAUGGCCUCUACGGCCUUGGUGGUCGCAUCGUCGUGUCGACGUCCAGGGCAUCGACGACACCAAUCCAGGCAACGAGGAGCCCGCGUCAUAUCGUCGCCAUCUUGACGCAGCUCCGGGCUCAGCCCUGGAGCAUCGCCGCGCCCCACAUGCGGAGCUCCGCCCCAAACACGCGCGGUGGCCGCGCUUGCUUGCCCUGAAGCUGCGGAGGACGACGACGAUGGCGGCGGCGAACGGACAACGGCGCGGCUGACGCGGGUACAGGCGGUGGCGGACUGACGACGGCGGCGCCGGGCGGACGGACGACUGCGUGGCGCACAUGAGAGCGGGCGGCGGCGGACGGACGACGGCGUGACGCCCGCGAGCGCGGGAGGUGGCGAACUGACGUCGGCGGCGCCGGGAGAUGGACGAUGACGGUGUGAUUGACGUUGGGGGUACGGAAUGGCACCGAACGAAGAAAAUUCGCACUCCGAUAGCGUAUUCUGAAAGUAGCACAAAUUAAAUGGUAAAUCCUAAAAGCAUUGCGUAUUCGAUGGCAUAUUCUGAAAAUUCUCGCCCGCCUAUCCGCCAUCCCGAAACGCCGCCGCCUCCCCUCCUCAUCGCUCCGCCUCCUAUUGCUGCCGGCCGCCGCUGCAUCCUUCUCCUGAUCUCCUUCCCAUGCCAGGCACCACGGCAACCUUCUCCUCCCCAUCACCGCCUCCUAUCCAUCCCCUUCAGACGUCACCGCUGCACCAUCCAAGCCACGCCACCAGUCCCUCAUCGGACGAGCUCAAGGGCGCCAGAUCCGGGCAGAACGAGCGCCGACGCUGCCUCCUGCCCAUCCCUAUUCUGGGCUCCCCUCGGACGACAUGCACGGGCUGAGCGGCGACACUGUCGACGACACGACGACGACGACAUCCUCCUCAGCGAGAUGCUCCAGUCGACCACCCCCGACGGUCUCUGGUUAAUCCACAGCUGCUGCAGGUUUUCUCCCUUUAUUCCUGCUCAUCUUUAGGCCUCCUUCUCCCUGACCUCGCUGUGGAGGAACGAGCUAGACGGCGGCAGCCUUUCAUCCACCGUCAUCCUCAAUUUUGUUUAUUCUCUGGCAAAGAGGCAAUAAAGCUCACCGGAGAUACACACAAGUUAUCAAUUCCGGUACUCGUUUCUUUAGGUGCAGAACUGGGACUUUAACCACUGUACAAUUCAGUGAGAGAGCAAUGCUCAUGCCAAACAAGGCUGUGGUAAAUGAGAUAUCACAAGACGGUGGAUUCGGUGAUAAGUUAUAUUAUUAUCCUCACUGAAAAUAUUGUCUUACUUUCUAUUCAUUACAAAUAGUUAAAUCUCCUUAUUUCAUCAUUGAUGCUAAUCUGAAAGUAUUGAUCAUACAAUAUCUUUGUAAGGAAAACAUAUUUGACAGGCAAAAUUUGCUAUAGGACAUCCAAAAAAACGUGUAAUUAGCUAAGAGACACCGCAAGAACGCGUUUUUGCUAUAGGGCACCGUAAAAAACUGGUAAUUAGCUACUGGACACCCUCGGGAUUAUUUUAUUAUAUCCGGAAGAAUUGGAGAGAGAAACAGCUGUGUAAGUACAGAUCUACCCUUUGAUUUUUUUUUCUUUUUCUUUUUUCUUCCUUAUCCUUUUCUCCCUCUCUCGUUCUCUCUCUCUCUCUCUCUCUCUCUCUGCUCUCAACCGUCGCCUUCAACCUCGCCCGCGGCCGCCGCCGCUCCUCCUAUGCUCGCCCACUGUCGCUGCUCCGCCCACCGCGCUCGCUUGCUGUCGCUGCUCCUCCCAGGCUCGCCUGCCGUUGCCGCUCCUCCUUCGCUCGCCCACUGUCGCCGGUGCUACUGCUCCAUGGCUUCAUGUCCUUCAUGCCCAGCACGGUGAUGUAGACAUGAACGCGCUCAGCCACUCAUCAGUAGCCGACGGCGACCAUUGGCGCGAACGCGGUGCCGAACGAGCAGUCAGCGGCGGCCUGCGAUGUUAGCUAAAUAAUGCAAUCUUGUGCAUCUAGUUUCUGUAGUUGCAUUGCAUAUGGUUGGCUGUGUUAGAAUCUGUCAGCAGCCGUUUUACUUCCAGUUAGCAUGUAGCUGUUUUCUAGCUAGUUUUUCGGUUGGACUGAAUUGGAUCGUGGGAUGGCACGGUCAGUAGUGGAUCCAGAUCAAUCGGGUGUUUUUUCUGUUAUGCAUGUAACAAACUCUGUAAUUGAGGAGAAUAAUUAGGAAACCAGAAAAGCAGCAGGGUACUUCGCUGUGCCAAAACUCUGCUCGUUCUACUCUGUUCUUCAGUUAACUAUUCAUAUAUUCGACAAAAGGUUCAGAGAUUGUGAGAGUGAGAGUUUGAUCCUGUAAAAAUGAGACCGUGUGCUUCACAUCCACCAUCGUUUCUUCUCCUCUCUUGCUCUUUGCUUGGUGAUGAGAAUGUAAGAUGUGUUUAAGCCCGUGAUUAGUGAAGACUAACUAAAGAAAAUGUUUAGCGGCCCACGUUGGAUUAACUUGAGCCAAGGGUAAACUAGUCUUUAAUGAUUGUUUCUCUCUCCUAUUCCUCCAAAAAUAAUAAAAUAAUCCCACCAGUGUCCAGCGGCUAAUUACCAGUUUUUUACGAUGCCCUACAGCAAAUACACGUUCUUACGAUGUCCCCUAGCUAAUUACACGUUUUUCAGAUGUCCUGUUGCAAAUUUUACCUAUUUGAUAUGAACCUCAUAUUCUUUUUAUAAGGAGAAACAAAGUUGAUCUCUCAUUGUCAGUAACAAAAGCAACUUAGUUUGAUGGUAUGUAAAACUAGAUUAUCGGGUAAGUUGAAUGUAAAAUUUUGUGAUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
9.96%
ME_num:
MEP:
85.98%
HE_num:
HEP:
3.86%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.85
Avg Expression:
10.63
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -1.16073370592591 | 0.00199950772460555 |
| 2 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.07748155248144 | 0.0308176142303525 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.314984537432 | 0.00118036975451699 |
| 4 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.45684307219413 | 0.000418108604527685 |
| 5 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.00738660556121 | 0.00353673451290897 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 2.0921866520854 | 2.19312937456337e-13 |
| 7 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.77897901903834 | 4.95280547990457e-19 |