Chr:
Chr1
Start:
685838
End:
686818
Strand:
+
Ref_name:
LOC107278096
Sequence
(XR_001547580.2):
UGUUUGUUUUGUAUAAACCAACAAUUCUGUUUGUUCCUUUUUUUUUUGUUUUUUUGACAGAACAAUGCAACGUCUCUUUUGCCAGUGCCAGUGCCAUGUGCAGGUCAUGCAUUUGGUCUGUAAAUUAACCCAUCGAACAAUUUCAUAAUGUCAAAAACUAAUUAAAAGGCAGAGAUAGAUCAUAGAUGCAUGGAGCAAAUGAGAAAGGAGGAAGGGAUGAAGCGGCGGCGGCGGCGACAUUGCUGCUCGAUCUCGUUGCUACUGCUUCUGUCCUUGUUCGUCCUCCUCACAUUGCUGCACAUCGCCCUGCUCACCGGAGGGCAGUCCAUGGCCGGGCGAGGCGGCGGCGAGCCACCGCCGGCGCCGACCUCCAGCGGCGGCUCCCAUGAAGCUUUCACUUGGCCCGGCUACGGCGACGUGCUGCCGGUGCCACCUCUGUCUCCUGACAAGCAGCACUAGUGCCCCAUCAAUUGACUUGUUCACCAGAUCGGAUCGAUGGCCGGCCGGGAACUCCAUGGAUCGAUGUGGCUGCAAGUUUUACUGCUCUGCACUAGCAAUUUGUAAUUGGCUGUGUAGGCAAUGCUCGCGUUAUAGAUAAACUCUUUCCUAGCACAACGAAUCUGGAUAAACAACGAAUCUGGAUAAACUUGUAGCCAGAUUUGUUGAAUUAGCAGGAGUCACAUUUAAGCCUAGGUUAAGUUUUUUUAGACGGAGAAAGUAGCGAGUAGCAAUCAACCUGUACUAUUGUACUACAUGUAUCCACCAAUUGCUCUAGUAUGCUUGAACAUUGCAGAUAUGGUUGACGAUUUCACCUUCUGUUUCAACACCGUCGGUUUAAUAAUGUUUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
73.37%
ME_num:
MEP:
21.34%
HE_num:
HEP:
5.08%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_elongation_zone
Tau :
0.93
Avg Expression:
20.02
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 5.82253736119404 | 5.04046007320208e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 4.45981717893242 | 0.00826069766131633 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 6.19263741105817 | 5.67201838329229e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 5.47225071076712 | 0.000390106911275548 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 6.41663521478681 | 1.26999341885195e-06 |
| 6 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -4.16889095546108 | 2.13848303629794e-05 |
| 7 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -3.74864061507235 | 0.000832620802592844 |
| 8 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -3.15076984705971 | 0.00699626395885095 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 5.90668660512103 | 1.88597920060471e-05 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 6.73859323348975 | 4.93348046373437e-07 |
| 11 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.87246886009303 | 0.00630805261089105 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.42332141936122 | 0.00416841696380845 |