Chr:
Chr12
Start:
9466223
End:
9468268
Strand:
+
Ref_name:
LOC107278082
Sequence
(XR_001542234.2):
UGGGCCCACACAAAAAAUCCAUCGCGUCGUCACCAUCGUCGCACAAAAAUCCCCAUCUGCGCGGGCGCGAUUCACCCAGGCCACACCGCCGCCUCCACCCACGCUGCACGCCGCCGUUGACUCCGCCCACCGGCGUCCUGCGCCCCUGCGCCCGGCCGAUUCCUCCUCCUCCUUCUGUCCGUCCGCCGCCGUCCGUCCGUCGCCUGCUGACGCCUCCCCUCCUCGGCCAUCGACUCCGCCCGCCGGCUUCCGCUGUGGGCUCCUCCCGUUGCUGGGCUGGAGGAUCGGGAUGGUAGCGGCGGCGGCGACGGCGCUCAACGCCCUCGUGGCGCUCGGAUCCGCCUCGGGGACGGCGUCCAAGUCGUCCUUCGUGAAAUCCAUCGUCAAAGCCCACGAUGUCGUCAUCUUCUCCAAGUCAAAAUCGGAAGGGCUGCUGAAAUUGUUCUGCUAAAGAUGUCACUUGUCCCAGAAAUUGUCCAUUGAAGAGUUUUUUGCUGAUGCUCUUGUAGACUUGUCCAUUAAAGAUGUCACUUGUCCUAGAAAUUGUCCAAUGAAGAAAUUGUCCAUUGUCCAUUGAAGACUUGUCUGUACUCUUGUGUGCAUAUGCUCUAUGCAGAUGCAUAUAUAUAUUGCUAUCCUAGGUGCAACAGAACUGUUUUUUUUUUUACCUGAGAUGCAACAGAUGUUGAAUGCAUAUUGAUAGUCUAUGGAGUCUUGAAUUGCUGAAUGUGUGUUAAAUGUCUAUGGAAUUUGUACUGAUUUUGUGGGUUGAUUUGGUACUGAUCUUAAUUUGUGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
5.08%
ME_num:
MEP:
7.72%
HE_num:
HEP:
86.99%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flower
Tau :
0.59
Avg Expression:
63.36
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.24671692309675 | 2.19523622286299e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.09574116397413 | 1.50841115991229e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.70776525800285 | 1.13033786346802e-17 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.71350478367892 | 9.3098309031649e-11 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.51567396245325 | 7.08072132170117e-11 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.99308605037713 | 3.73581926858119e-20 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.32972307478279 | 3.55281342911246e-10 |
| 8 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.26133705057051 | 2.98988695251211e-13 |
| 9 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.54330721978538 | 0.00037176060690992 |
| 10 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 1.95468044714957 | 0.0129772410319781 |
| 11 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.12228186026654 | 4.48704551584717e-07 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.79948526180526 | 1.7547329586869e-20 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.31957746460585 | 1.55171681715182e-10 |
| 14 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.16625554842442 | 1.0758271775525e-09 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.4037560974169 | 2.67900885676069e-09 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.39527121110375 | 1.30194974286267e-13 |