Chr:
Chr8
Start:
16014854
End:
16015830
Strand:
-
Ref_name:
LOC107278074
Sequence
(XR_001548022.2):
CUCUCUCUCCAUGGUUUCUUCACCCUCCACCGCAUCACAACAUCCGCCGCCACCACAAGCGCUCGCUUAUCCUCCCCCAUCCCCGCGCGCCAGCCGCCGUGCUCGGCGGACGCGGAUGAGCGCGGCGACGACGGCAGCGGACGCGGACGAGGGAGGCGACAGCGGUCAAGGCGUGGUGGACGCGGACGAGGGCGGCGACGGUCGCGGACGAGGGCGGCGGCGGCAACGACAGCGGACCCGGACGAUGGCGGCUGCGUCGGUCACGGCGAACGCGGACGAGGGUGGCAGCGGCGGAGGUCAUGGACGAGGACGGCAGCUGUUGAGGGCGGCGGCAGUGGUCGAUGGCGUGGUGGACGCGGACGAGGGCGGUGGCGACGACGACGGCGGCGGACGCGGACACAGACGAAGGCAGCAGCGUCGGUCACGGCGAACGCAGACGAGGGCGGCAAGCCGGCAACAGCGAUCGUGGCAUAUGUUGUGAUAAUAUGUUCUGAGAUUUAUUUGUUUUGCAGCUCUGAUGUGCGGAUGAGUACUCUCCGUCUCUCCGUCGCAUAUCGAGAAUGCCUAUUGCCUGUGAUGCCUUCUAUGUUUCGGUUCUGAGCAGCAGUUGAGCGAAUAAGGAGGCAAGAUUCUAAGGAUUCAAACUUACUGUGUUUAGUUAAGCAACACAACAAGGUCAGCACUUAAUCUUUUUUGUGUAUGUAUGGAUAUAUUCCCUUUAUUCAUUGAUUUGCACUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
25.61%
ME_num:
MEP:
59.15%
HE_num:
HEP:
15.04%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.89
Avg Expression:
11.67
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 2.08959292511861 | 0.00225696791301559 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | 1.78852472477978 | 0.0126733156847843 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 2.82731015038508 | 4.01333837793206e-06 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 2.67791720597481 | 1.33002774696382e-05 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.60613905882858 | 0.0299959095226428 |
| 6 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 3.09946578400083 | 6.44271984902169e-14 |
| 7 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.56952004626848 | 0.000246634007893519 |