Chr:
Chr10
Start:
17391432
End:
17393981
Strand:
-
Ref_name:
LOC107278057
Sequence
(XR_001540387.2):
CACCAUUCUUCACCCACCAUCCCAGUACCGAUCCAACCGAGGGAGGAAGCUCCAGCUCUCCCUCUCCACCUCUCUUUCGUCGCCGGCCGCCAAGAAGAGGGACAUCGCCAACCGUCGUCGAGCCCUCUUCAUCUCUAACUCAUACUCGUUCCAUUCUCAUCUCACCAUGACGAACAACUUUGGUUUUGAUCCCAUUCCAUUUCAUCUUCUACAGCAGCGGGAACGCCGCCAUGUCAUGGUCGCUCUAGAGCGCGCUCUGUGCACCGCCGCAGUGACAUCAUCGCCGUUCCCGCUUAUCUGGACCAAGCCGGGCCAAGCUGUCGCGCCAGCGUCUUCGCCUCAACCUCCUCUCCAUUUCCCCUCAAGAAUCUCGAAGGAUGGUGCUACGAGUGUGGAGAUCGUCCACCGUCUUCUCCACCUCCGGUCACCGUCGCCGUUGCCGAAUCCACCCCCUCCGUUCUUGGAGCUGAUUGAGCCAUCGCCGUUCACCCGGAGGUUCUUGCCGCCGCCGAGCCGUUACACGAGCCGCCGUCAUCAACCUAGCUACCCCAGCCAUGUCUAGCAUCUCGAUGAUUGCUUAAUCGGUGAAGAAGUGAUUUAGGUGCUGACAUUUUCCUGAUUCAAGGCAAGUCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
25.81%
ME_num:
MEP:
25.2%
HE_num:
HEP:
48.78%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.88
Avg Expression:
76.87
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -6.11227388201122 | 4.96100129651162e-11 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.99661624035279 | 1.47458040154229e-12 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -8.80610051268819 | 2.00259744397166e-12 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -6.83848414361794 | 1.43772675963047e-07 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.6122145338333 | 1.94951048722884e-09 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -8.21761533571998 | 9.46884634366151e-11 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -5.05883324966776 | 1.84844617972103e-16 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.50180164225669 | 7.11319420159848e-06 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.30662087077477 | 0.014775324622518 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | -1.07257374532109 | 0.0275279513996992 |
| 11 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 3.01099900314918 | 4.69746079588696e-06 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.02069144059549 | 0.00132818225371147 |
| 13 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -7.49441757283639 | 7.5063560033591e-07 |
| 14 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.02884677553314 | 0.00416812262000005 |
| 15 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -3.19895578103549 | 0.0356751378240792 |
| 16 | 9311 // leaf // control--/--9311 // leaf // salt | 2.62491443511357 | 0.00251156986006053 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -8.6195522728753 | 4.75295857504542e-12 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -7.24549104555301 | 3.98586673460439e-11 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.6319494174715 | 1.15285559603272e-08 |
| 20 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.15548133787018 | 0.00163651120439089 |
| 21 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.3106699533476 | 0.00206046193953579 |
| 22 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.30002319619186 | 0.0145575686673359 |
| 23 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.96427924634547 | 5.43994814528245e-27 |
| 24 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -5.16394494686394 | 2.72307495589721e-28 |
| 25 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -8.50989308268438 | 1.78567719934759e-11 |
| 26 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.96979141152343 | 0.00016720388567964 |
| 27 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.2206504474216 | 2.81415318355277e-05 |
| 28 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -9.23653909618548 | 9.3261284040674e-14 |