Chr:
Chr7
Start:
16732935
End:
16735752
Strand:
-
Ref_name:
LOC107278031
Sequence
(XR_001547279.2):
AAAAGAAAGAAACGGCACACGCUACUCCUCCGCGACGCGAAAAAAAAAGAAACGGCGCCUCCUCUUCUCACUCGUCACCCGACACCGCAGACUUCUCCCUCUCCGCCGUCGUCGUAUCCCGCCUCCUUCACACCAUCGCCGCCCCUCAAUCCAUCCUCGCGCCUCCCUCGACCGCCGCCGCACCGAUCCGAUCUCUCUCGCGCUUCUCCCCCGCCGCCGCCGCUCCAGAUCCCCCCGCUUUUCCUCCUCCUUCCGCCCACCUGCCAUCGACGCCACUGCCCCUGCUGCUGACUCCACCUCCUCCCCGCCGCCGACGCCUAGCGCCGCUGCUGCCCACCCGCAACCGCCAUUGCCCAACCGCAACCGCCGUUGCCGCCCCAGAUACCCCGCCUUUCCUCCUUCCGCCCACCUGCCACCGACGCCGCCGCCCCUGGCAGUGACUCCUCCCCGACGCCGACGCCACCGCCGCCGACGCCUACUGCAACCGACGCCGAAUCCCCCGCCGCCAACGCCACCGCCACCGCCGUCGACGCCUACUCCUUUGGCAGUGUGGAGGACUGCUGCUUCCCUGUCCCCAUCUAGUGUGUGCACGCUUUGUGUUUGUUAAAAUGCAUAUGUGAAAAAACUAUUGCUGAAUCUUAUGGUCUAGAUUGAUAGCUGAUGCAUUGGGGUGAUCAUACAAAUGAUUUCCGUUGGUAAUCAUUUUUCCCUACCUUACCAUGGAAUCUCUACUCCUCACUGAAGCUUGAAAUGCUAGCUCCUCAGGGCUCAGGUGCGCUGGAGCAUGCAGUUUGACAACAAGUACAUUGCUUUGUGUCUAUGCUUCCCUACUGCUCAAUGAAAUGAUUGGCUGGGUUAGCUCCUGUACUUAAAUCGGUUUCAUUCCUAUGCAACAAUUAAGCACAAAAUAUAACAUAGUUGGGGGGUUCAUGAUGUUUCAGAAACUUGGAUGUAUUCUGUGUAUAUUAAUAUUUAGGAUGUGAGAAUGAAAUUUCUCCCUUUCAUGUCUUCAUGGAGGACAAUAAUGGUAACCACAGUUUUUUCACAUAUGCAACAAUCAAGCACAAAAUAAAACAUAGUUGGGGAGUUCAUGAUGUUUCAGAAACUUGGAUGUAUUCGGUGUAUAUUAAUAUUUAGGAUGUGAGACAAUGAAAUUUCUCCCUUUCAUGUCUUCAUGGAGGACAAUAAUGGUAACAACAGUUCUUUUCACAUAUCCAACAAUCAUGCACAAAAUAUAACAUAGUUGGGGAGUUCAUGAUGUUUUCAGAAACUUGGAUGUAUUCGGUGUAUAUUAAUAUUUUGGAUGUGAGACAACGAAAUUUCUCCCUUUCAUGUCUUCAUGGAGGACAAUAAUGGUACCUUAAUCUAUGGCAUCAUGGUUCCAAAUUGUGUUCAAGUUGGGUAAGUUUUUUUUUUUUUUGUGGCAACUACCCUUCAGAAUUGUGGAACAUAAUACUAAGGUCAAAAUUAAAAAUCGGUGCAUGAGGUGUGGGUUAAGGAGAUUAUAAAAUCAAGAUGAGGGUCUUUGCUAGAUAUAAGUUCACAUAGAAAACCAGGAUUAGCUUAAUUUUCUACUUGGACUGAACUUGUAGUAGAACCAAAUUUCAGAAGGAGCCUGUCCUGAGCACAACACUGUGCUUUAAAUCUAAUGCAAGAGAUUUAUAUAAGCUGUGGGACAACGAUUUGUAUUCCAGGAUGGAGGUUCAAUAUUUUCCUUCUAAAUAGAAGCAGAGAGUUGGCAUCUUGUGCAGAAUGUUUCCUCAUUUGUUCUCCUUUUGACAAGUAAAAUGCAUCAAUGAUAAUCUGUGGGUGGAAAUUAGCAUCACAUGCUUCAUUCGUCCAUCACCUAAAAAGAUUCUCAUAUAAUCUGAUAUUGGUUUCUGUAGGUGAAUGUUUAGUUGUUUAAACAUUGCUUUAUUACUGCCAAUUAAACUCGCCCUUUUUUCUCUUUAGUUGCUUCCCUGUUUGUGAUCAAAUCAACGGUUUAUCUAUGCUUUGUACUCAGCUUUGUUAGGUAGUAUCAGAUUAGAGAGCACUGAAUAAUUAACUAUUUUUUAUCUUCUACUGACAGCUACCAAGUGAAAGGAUAGUUCAACUACCCUGGUGUCCAUGUUGAGUAUGACCAACAUCGGCAUCCUUUACAUAGUUGUCAAGUGCUUUUUUUUUGAUAAAACUGAUUAUAUGACAUAUAUAUCCUCCCUGGGUUCUGUUUUUUCCCCUUGAAUCUUUUUUUGUUACAAAUCUGGGCAAUCCAGUAGGCAUUAGCGAAGACAGUCAUCAUUACCUAUGAUAAACAUCUGAUGCUAUCUAAACAAUCAAGUUAAUAGCUCCCAACUAAUAGAACUUGAAAAGGAGGAUUAAUGAUUGUUACUUGCAGCUGCUGGAACCUAGAAUGGUCUACUUCAUUGUCAGGGAGUAGAAGGUGGUGGAGUUGUCUCGGAGGCACUCCCUCAAGGCUGCUGAGGCCACCCCGUUCAAGAGACUGAAUGUGAAUAUACUCUUGAGAAAUUUGCAGUAAAUUGGCAGUAAUGGCACCAAGGAUCAAAGAAAAUACUACCAUUUUUUUUGCUGAGUCCAAGUUAUGGUUUAGCACUGGAGACACAUUAUUAAUUUUCUUCUUGCAAUAUGUAUUCAGCGUGUGGGUUGAUAAUUUAGAGAGCUCUAAAACGAUAGCGGAAAAUCAAACAAAAAUCUUACUAGGCGCAAGUGCUAAAUAAUGACAGGUAUUUCCAAAGA
Sequence
(XR_001547280.2):
AAAAAGAAAGAAACGGCACACGCUACUCCUCCGCGACGCGAAAAAAAAAGAAACGGCGCCUCCUCUUCUCACUCGUCACCCGACACCGCAGACUUCUCCCUCUCCGCCGUCGUCGUAUCCCGCCUCCUUCACACCAUCGCCGCCCCUCAAUCCAUCCUCGCGCCUCCCUCGACCGCCGCCGCACCGAUCCGAUCUCUCUCGCGCUUCUCCCCCGCCGCCGCCGCUCCAGAUCCCCCCGCUUUUCCUCCUCCUUCCGCCCACCUGCCAUCGACGCCACUGCCCCUGCUGCUGACUCCACCUCCUCCCCGCCGCCGACGCCUAGCGCCGCUGCUGCCCACCCGCAACCGCCAUUGCCCAACCGCAACCGCCGUUGCCGCCCCAGAUACCCCGCCUUUCCUCCUUCCGCCCACCUGCCACCGACGCCGCCGCCCCUGGCAGUGACUCCUCCCCGACGCCGACGCCACCGCCGCCGACGCCUACUGCAACCGACGCCGAAUCCCCCGCCGCCAACGCCACCGCCACCGCCGUCGACGCCUACUCCUUUGGCAGUGUGGAGGACUGCUGCUUCCCUGUCCCCAUCUAGUGUGUGCACGCUUUGUGUUUGUUAAAAUGCAUAUGUGAAAAAACUGUGGAUUGCUGAAUCUUAUGGUCUAGAUUGAUAGCUGAUGCAUUGGGGUGAUCAUACAAAUGAUUUCCGUUGGUAAUCAUUUUUCCCUACCUUACCAUGGAAUCUCUACUCCUCACUGAAGCUUGAAAUGCUAGCUCCUCAGGGCUCAGGUGCGCUGGAGCAUGCAGUUUGACAACAAGUACAUUGCUUUGUGUCUAUGCUUCCCUACUGCUCAAUGAAAUGAUUGGCUGGGUUAGCUCCUGUACUUAAAUCGGUUUCAUUCCUAUGCAACAAUUAAGCACAAAAUAUAACAUAGUUGGGGGGUUCAUGAUGUUUCAGAAACUUGGAUGUAUUCUGUGUAUAUUAAUAUUUAGGAUGUGAGAAUGAAAUUUCUCCCUUUCAUGUCUUCAUGGAGGACAAUAAUGGUAACCACAGUUUUUUCACAUAUGCAACAAUCAAGCACAAAAUAAAACAUAGUUGGGGAGUUCAUGAUGUUUCAGAAACUUGGAUGUAUUCGGUGUAUAUUAAUAUUUAGGAUGUGAGACAAUGAAAUUUCUCCCUUUCAUGUCUUCAUGGAGGACAAUAAUGGUAACAACAGUUCUUUUCACAUAUCCAACAAUCAUGCACAAAAUAUAACAUAGUUGGGGAGUUCAUGAUGUUUUCAGAAACUUGGAUGUAUUCGGUGUAUAUUAAUAUUUUGGAUGUGAGACAACGAAAUUUCUCCCUUUCAUGUCUUCAUGGAGGACAAUAAUGGUACCUUAAUCUAUGGCAUCAUGGUUCCAAAUUGUGUUCAAGUUGGGUAAGUUUUUUUUUUUUUUGUGGCAACUACCCUUCAGAAUUGUGGAACAUAAUACUAAGGUCAAAAUUAAAAAUCGGUGCAUGAGGUGUGGGUUAAGGAGAUUAUAAAAUCAAGAUGAGGGUCUUUGCUAGAUAUAAGUUCACAUAGAAAACCAGGAUUAGCUUAAUUUUCUACUUGGACUGAACUUGUAGUAGAACCAAAUUUCAGAAGGAGCCUGUCCUGAGCACAACACUGUGCUUUAAAUCUAAUGCAAGAGAUUUAUAUAAGCUGUGGGACAACGAUUUGUAUUCCAGGAUGGAGGUUCAAUAUUUUCCUUCUAAAUAGAAGCAGAGAGUUGGCAUCUUGUGCAGAAUGUUUCCUCAUUUGUUCUCCUUUUGACAAGUAAAAUGCAUCAAUGAUAAUCUGUGGGUGGAAAUUAGCAUCACAUGCUUCAUUCGUCCAUCACCUAAAAAGAUUCUCAUAUAAUCUGAUAUUGGUUUCUGUAGGUGAAUGUUUAGUUGUUUAAACAUUGCUUUAUUACUGCCAAUUAAACUCGCCCUUUUUUCUCUUUAGUUGCUUCCCUGUUUGUGAUCAAAUCAACGGUUUAUCUAUGCUUUGUACUCAGCUUUGUUAGGUAGUAUCAGAUUAGAGAGCACUGAAUAAUUAACUAUUUUUUAUCUUCUACUGACAGCUACCAAGUGAAAGGAUAGUUCAACUACCCUGGUGUCCAUGUUGAGUAUGACCAACAUCGGCAUCCUUUACAUAGUUGUCAAGUGCUUUUUUUUUGAUAAAACUGAUUAUAUGACAUAUAUAUCCUCCCUGGGUUCUGUUUUUUCCCCUUGAAUCUUUUUUUGUUACAAAUCUGGGCAAUCCAGUAGGCAUUAGCGAAGACAGUCAUCAUUACCUAUGAUAAACAUCUGAUGCUAUCUAAACAAUCAAGUUAAUAGCUCCCAACUAAUAGAACUUGAAAAGGAGGAUUAAUGAUUGUUACUUGCAGCUGCUGGAACCUAGAAUGGUCUACUUCAUUGUCAGGGAGUAGAAGGUGGUGGAGUUGUCUCGGAGGCACUCCCUCAAGGCUGCUGAGGCCACCCCGUUCAAGAGACUGAAUGUGAAUAUACUCUUGAGAAAUUUGCAGUAAAUUGGCAGUAAUGGCACCAAGGAUCAAAGAAAAUACUACCAUUUUUUUUGCUGAGUCCAAGUUAUGGUUUAGCACUGGAGACACAUUAUUAAUUUUCUUCUUGCAAUAUGUAUUCAGCGUGUGGGUUGAUAAUUUAGAGAGCUCUAAAACGAUAGCGGAAAAUCAAACAAAAAUCUUACUAGGCGCAAGUGCUAAAUAAUGACAGGUAUUUCCAAAGA
Sequence
(XR_003243529.1):
AAAAAGAAAGAAACGGCACACGCUACUCCUCCGCGACGCGAAAAAAAAAGAAACGGCGCCUCCUCUUCUCACUCGUCACCCGACACCGCAGACUUCUCCCUCUCCGCCGUCGUCGUAUCCCGCCUCCUUCACACCAUCGCCGCCCCUCAAUCCAUCCUCGCGCCUCCCUCGACCGCCGCCGCACCGAUCCGAUCUCUCUCGCGCUUCUCCCCCGCCGCCGCCGCUCCAGAUCCCCCCGCUUUUCCUCCUCCUUCCGCCCACCUGCCAUCGACGCCACUGCCCCUGCUGCUGACUCCACCUCCUCCCCGCCGCCGACGCCUAGCGCCGCUGCUGCCCACCCGCAACCGCCAUUGCCCAACCGCAACCGCCGUUGCCGCCCCAGAUACCCCGCCUUUCCUCCUUCCGCCCACCUGCCACCGACGCCGCCGCCCCUGGCAGUGACUCCUCCCCGACGCCGACGCCACCGCCGCCGACGCCUACUGCAACCGACGCCGAAUCCCCCGCCGCCAACGCCACCGCCACCGCCGUCGACGCCUACUCCUUUGGCAGUGUGGAGGACUGCUGCUUCCCUGUCCCCAUCUAAUUGCUGAAUCUUAUGGUCUAGAUUGAUAGCUGAUGCAUUGGGGUGAUCAUACAAAUGAUUUCCGUUGGUAAUCAUUUUUCCCUACCUUACCAUGGAAUCUCUACUCCUCACUGAAGCUUGAAAUGCUAGCUCCUCAGGGCUCAGGUGCGCUGGAGCAUGCAGUUUGACAACAAGUACAUUGCUUUGUGUCUAUGCUUCCCUACUGCUCAAUGAAAUGAUUGGCUGGGUUAGCUCCUGUACUUAAAUCGGUUUCAUUCCUAUGCAACAAUUAAGCACAAAAUAUAACAUAGUUGGGGGGUUCAUGAUGUUUCAGAAACUUGGAUGUAUUCUGUGUAUAUUAAUAUUUAGGAUGUGAGAAUGAAAUUUCUCCCUUUCAUGUCUUCAUGGAGGACAAUAAUGGUAACCACAGUUUUUUCACAUAUGCAACAAUCAAGCACAAAAUAAAACAUAGUUGGGGAGUUCAUGAUGUUUCAGAAACUUGGAUGUAUUCGGUGUAUAUUAAUAUUUAGGAUGUGAGACAAUGAAAUUUCUCCCUUUCAUGUCUUCAUGGAGGACAAUAAUGGUAACAACAGUUCUUUUCACAUAUCCAACAAUCAUGCACAAAAUAUAACAUAGUUGGGGAGUUCAUGAUGUUUUCAGAAACUUGGAUGUAUUCGGUGUAUAUUAAUAUUUUGGAUGUGAGACAACGAAAUUUCUCCCUUUCAUGUCUUCAUGGAGGACAAUAAUGGUACCUUAAUCUAUGGCAUCAUGGUUCCAAAUUGUGUUCAAGUUGGGUAAGUUUUUUUUUUUUUUGUGGCAACUACCCUUCAGAAUUGUGGAACAUAAUACUAAGGUCAAAAUUAAAAAUCGGUGCAUGAGGUGUGGGUUAAGGAGAUUAUAAAAUCAAGAUGAGGGUCUUUGCUAGAUAUAAGUUCACAUAGAAAACCAGGAUUAGCUUAAUUUUCUACUUGGACUGAACUUGUAGUAGAACCAAAUUUCAGAAGGAGCCUGUCCUGAGCACAACACUGUGCUUUAAAUCUAAUGCAAGAGAUUUAUAUAAGCUGUGGGACAACGAUUUGUAUUCCAGGAUGGAGGUUCAAUAUUUUCCUUCUAAAUAGAAGCAGAGAGUUGGCAUCUUGUGCAGAAUGUUUCCUCAUUUGUUCUCCUUUUGACAAGUAAAAUGCAUCAAUGAUAAUCUGUGGGUGGAAAUUAGCAUCACAUGCUUCAUUCGUCCAUCACCUAAAAAGAUUCUCAUAUAAUCUGAUAUUGGUUUCUGUAGGUGAAUGUUUAGUUGUUUAAACAUUGCUUUAUUACUGCCAAUUAAACUCGCCCUUUUUUCUCUUUAGUUGCUUCCCUGUUUGUGAUCAAAUCAACGGUUUAUCUAUGCUUUGUACUCAGCUUUGUUAGGUAGUAUCAGAUUAGAGAGCACUGAAUAAUUAACUAUUUUUUAUCUUCUACUGACAGCUACCAAGUGAAAGGAUAGUUCAACUACCCUGGUGUCCAUGUUGAGUAUGACCAACAUCGGCAUCCUUUACAUAGUUGUCAAGUGCUUUUUUUUUGAUAAAACUGAUUAUAUGACAUAUAUAUCCUCCCUGGGUUCUGUUUUUUCCCCUUGAAUCUUUUUUUGUUACAAAUCUGGGCAAUCCAGUAGGCAUUAGCGAAGACAGUCAUCAUUACCUAUGAUAAACAUCUGAUGCUAUCUAAACAAUCAAGUUAAUAGCUCCCAACUAAUAGAACUUGAAAAGGAGGAUUAAUGAUUGUUACUUGCAGCUGCUGGAACCUAGAAUGGUCUACUUCAUUGUCAGGGAGUAGAAGGUGGUGGAGUUGUCUCGGAGGCACUCCCUCAAGGCUGCUGAGGCCACCCCGUUCAAGAGACUGAAUGUGAAUAUACUCUUGAGAAAUUUGCAGUAAAUUGGCAGUAAUGGCACCAAGGAUCAAAGAAAAUACUACCAUUUUUUUUGCUGAGUCCAAGUUAUGGUUUAGCACUGGAGACACAUUAUUAAUUUUCUUCUUGCAAUAUGUAUUCAGCGUGUGGGUUGAUAAUUUAGAGAGCUCUAAAACGAUAGCGGAAAAUCAAACAAAAAUCUUACUAGGCGCAAGUGCUAAAUAAUGACAGGUAUUUCCAAAGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
19.72%
ME_num:
MEP:
71.14%
HE_num:
HEP:
8.94%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.63
Avg Expression:
6.27
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.06534562453712 | 0.0287774700480152 |
| 2 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -6.79180598468628 | 0.0311164141606499 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.032905422227 | 0.01146124868361 |
| 4 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.54668022944858 | 0.0143970445524003 |
| 5 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.54675321692219 | 0.0146824167066595 |
| 6 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.54689490572392 | 0.0144394769647986 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.19178190997836 | 0.000377786821109844 |
| 8 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.35566251339066 | 6.59738991812162e-06 |
| 9 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.1048208601719 | 1.47963935772529e-05 |