Chr:
Chr8
Start:
1073906
End:
1075097
Strand:
-
Ref_name:
LOC107277996
Sequence
(XR_001548051.2):
CUGUCAUCUUAUUUGGCGUGUCCAAAUGUAAGAGCAUUUAUAUAGCUAGCUUUCCAAUUGAUUUGUCAAGCUAAACUCAUUACCCACUUCAACAGCCUCUCUAACUACACUCUCCGACACUGGGACCCACACGUCAGCCUCUGCUAUACCUUCUUCCUCUUUCUCUCCCUUUUUCUCUUUUCUUGGCACUUUUCGGAUGCAGCGGCGUGGCAAGACAGAGAGGAGCGACGCCGACGAUGGGAGGGCUGCGGGCGGCCGCGUCGGAUGUGGCCGAGCGUGGGGGCAUGGCCAGGCGUGGAGGCGGCCGCGGCGGAUGCGGCCGGGCGCGGGGGCGGCGGCGCUGGAUGCGGCCGGGCUGCAGCUUUUUCUUUUAGGCUUUUGGCUCCUUGAAUCCGUGCAGGCGCGCAAGAAUUCAAUGGCGGUUCUUGGAGCUUCUUGGGCUGGUCACUGAAGUAGUACGCAGUCUUGCGAUGCAGUCGGCGACGGAGAAGGUGAGGAGGACGCCCUCCUCCUGCCUGCUGCUGUGCAUCUCCGACAUCUGCAAGGAUGCGGCUGGGCAUGGGGGCGGCGGCGCCGGAUGCGGCCGCGGCAGCGGCGGGGGCGGCGGUGGCCGGCUGGAUGGAAGGGGAGGGGGCAUGGGGCCCACCGUUUGGCCAGCGGUUGUGGCUGGCUAGAUUUGGCCAGCUGCUAGCAGGAUUUGGCCAGUGGGAUGGCUUGGCCAGAGAGUUAAGGUCUUUUUUUUUUCAUAUGUUGGCUAUAAUUUAGCUUGGAGUGGCAUUUGGCCAUACUCUUGGAGAUGCUCUAAUGUGACCGUUUUUCUCUUUUCUUUUUUUUUUCCCUGAAGAAGAUUUGUCCGUUUAAGGCUUGUUUAAUUGGUGAAAUGAAAAUUUUUGGAUGUCACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
37.2%
ME_num:
MEP:
53.66%
HE_num:
HEP:
8.94%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.77
Avg Expression:
5.69
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.79532656129465 | 0.0431863301878766 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 7.63012548732913 | 1.35153763040403e-08 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.90902866578426 | 0.00392680874323222 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.19413101315945 | 0.00112011499102467 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | 1.69985799848208 | 0.0011458476796099 |
| 6 | Nipponbare // coleoptile // wild_type_plus_1hr_shade--/--Nipponbare // coleoptile // wild_type_plus_1hr_white_light | 4.0561318904308 | 9.84959691224461e-05 |
| 7 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 4.62681232985951 | 5.83161236133613e-18 |
| 8 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | 1.99220176112073 | 0.00731354468367918 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 1.0540347270227 | 0.0215225218450785 |
| 10 | 9311 // leaf // control--/--9311 // leaf // salt | -5.02110126028044 | 0.000962158699613544 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 7.71495563377248 | 7.65163095403963e-10 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.70489276745222 | 0.044400776406932 |
| 13 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -4.60072909710613 | 0.0020131335298126 |
| 14 | 9L136 // leaf // control--/--9L136 // leaf // salt | -2.51247325678069 | 0.000213762979140728 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 5.94163221840498 | 1.05724657770957e-05 |