Chr:
Chr4
Start:
24168402
End:
24170969
Strand:
+
Ref_name:
LOC107277960
Sequence
(XR_001545215.2):
CCGAGCGGACGAGCGGACGCGCUAUUCUAGCGCAGAAACACCGCCUCUAAGCGCUAUCCCCGCCACUGGACACAACCCGAUGACACCGCUGCCGAGCCAACGCCUCCUCGCACGCUUCUGUCGCUACUAUAGCACACGCUACGGAAGCCGCUACUCCUCCCACCACCUACCUGCAAAUUGUGCGCUAGCUGCCGCCGUGCGCCUUCUCUCAUUGCAAAUCACGUCAUCCCACCGCAGAUCGUAGCCUCCCCCACCGGCGCCGAGGUAGGAGCGCCCUUCCUGCCGUCCUACUCCGAUGUGAAAAGGAUUUGCUUACCGUCCUGCACGGUGUUGUUCCUCAAUCUUCGCAGUAGCGUCCUCAGUCGUUGCUGCUCCGCCGGCCGUGGUGGCGCAUGCUCUUCCUUCAAUCUCUCGGUUCAUAACUCAUGGUUCAGACUCCUUAGCCCACCGACACGCCAUCCAUCUCCAUCUCCACCAAGAAGAUGAAGGACGCUUGAUUUGGCCGCCUCGCUUUGAUUUGCCCGUCGAUCAUCUGUUGCAGGGUCAAUCGUGGAUACAGUACUUUUUAUCUGAACAAAUAUUGGCCUUUUGCUUUUUUGUGUGUUGAUUUUCAGUAUGCAUUUGUGUUUUGUCUUCAAAUUAUGUGGCGAAUUGUAAUCCAUGGAAAUCUCUUAAACAGUUGAUAGAAUUGUUGAUGCUAAUUCCCUUUGCGUGAGUUGCAGGUGUUCAGCAAAAUCCUGCUUAGGUACUGUCUCUUGCAAGCAAUUUGAUCCAUUGUGUUCUCCUUUCUUCACGAAUUCAGGGCACAGUCCAGUUUGCUGACACUAAACACUUCAAUGUUAUACAUAGUUCAUACUCUUUCUCUGCAGGUGGUCACUUAUUUCUACCUUUCUGUCUACUACAAUGGAUAGCGCCACUGGAAGCUCCACACCAAAUCCAGUGGAAUGAACAGGCCUCCAGCGUUGUUUCCAGGUGAAGUGAUUUAUCUGCCACCAGCAGUCAACACCUUCGUUUGUUUCAUGCCUUGUGAUAAUCUGUGCCUCAGAAAUCCUCCACUUCGCCCUACUAUUAUGUCAGUCAGGAAGUUCGGGUAUCACUAUGUACUCCUUCAACCAAUGAAGAUCACAUCAUGGUGUUUCAGAUUUUGUUCGAGUUGACAUUGUAGACAACAACUGAACAUUUUGCUAAAAUCUUGUCAUGGUUCACCAUGGCAUUUCACUGUUAGGUACACUGUUUUUAAGAGCUAUUACUACAGUAUAUAUUGGACUAUUGAGAAUACUCGACCCCUUGCUCCAUAUAUACAUCAUGAUGACGUCCAAUUAUGUGUUGCUCAAUCCUGAAGAGAAAACCGACAAGACAAUUGUGCAGAAAUGCAGGUGUUGCUGCUAAGUAACAUCAGGGGUGCUAGAGCUUAGUCAAGAUGCCUGGUGGCGGAGCUGAUGAUUUGGAGGCUUGGAGCAAACAUAUAGCGUGCUGACGAUGACCCUGUAUGCAUGAUUCCUAUUGAGUAAAUUUCUCUUUGGACAACCUUUUAGUAUCGAUGUUUCGCUUUGAACCACUCUUUAAGAGAUAAUCCAU
Sequence
(XR_001545216.2):
CGGACGAGCGGACGCGCUAUUCUAGCGCAGAAACACCGCCUCUAAGCGCUAUCCCCGCCACUGGACACAACCCGAUGACACCGCUGCCGAGCCAACGCCUCCUCGCACGCUUCUGUCGCUACUAUAGCACACGCUACGGAAGCCGCUACUCCUCCCACCACCUACCUGCAAAUUGUGCGCUAGCUGCCGCCGUGCGCCUUCUCUCAUUGCAAAUCACGUCAUCCCACCGCAGAUCGUAGCCUCCCCCACCGGCGCCGAGGUAGGAGCGCCCUUCCUGCCGUCCUACUCCGAUGUGAAAAGGAUUUGCUUACCGUCCUGCACGGUGUUGUUCCUCAAUCUUCGCAGUAGCGUCCUCAGUCGUUGCUGCUCCGCCGGCCGUGGUGGCGCAUGCUCUUCCUUCAAUCUCUCGGUUCAUAACUCAUGGUUCAGACUCCUUAGCCCACCGACACGCCAUCCAUCUCCAUCUCCACCAAGAAGAUGAAGGACGCUUGAUUUGGCCGCCUCGCUUUGAUUUGCCCGUCGAUCAUCUGUUGCAGGGUCAAUCGUGGAUACAGUACUUUUUAUCUGAACAAAUAUUGGCCUUUUGCUUUUUUGUGUGUUGAUUUUCAGUAUGCAUUUGUGUUUUGUCUUCAAAUUAUGUGGCGAAUUGUAAUCCAUGGAAAUCUCUUAAACAGUUGAUAGAAUUGUUGAUGCUAAUUCCCUUUGCGUGAGUUGCAGGUGUUCAGCAAAAUCCUGCUUAGGUACUGUCUCUUGCAAGCAAUUUGAUCCAUUGUGUUCUCCUUUCUUCACGAAUUCAGGGCACAGUCCAGUUUGCUGACACUAAACACUUCAAUGUUAUACAUAGUUCAUACUCUUUCUCUGCAGGUGGUCACUUAUUUCUACCUUUCUGUCUACUACAAUGGAUAGCGCCACUGGAAGCUCCACACCAAAUCCAGUGGAAUGAACAGGCCUCCAGCGUUGUUUCCAGGUGAAGUGAUUUAUCUGCCACCAGCAGUCAACACCUUCGUUUGUUUCAUGCCUUGUGAUAAUCUGUGCCUCAGAAAUCCUCCACUUCGCCCUACUAUUAUGUCAGGUUGACAUUGUAGACAACAACUGAACAUUUUGCUAAAAUCUUGUCAUGGUUCACCAUGGCAUUUCACUGUUAGGUACACUGUUUUUAAGAGCUAUUACUACAGUAUAUAUUGGACUAUUGAGAAUACUCGACCCCUUGCUCCAUAUAUACAUCAUGAUGACGUCCAAUUAUGUGUUGCUCAAUCCUGAAGAGAAAACCGACAAGACAAUUGUGCAGAAAUGCAGGUGUUGCUGCUAAGUAACAUCAGGGGUGCUAGAGCUUAGUCAAGAUGCCUGGUGGCGGAGCUGAUGAUUUGGAGGCUUGGAGCAAACAUAUAGCGUGCUGACGAUGACCCUGUAUGCAUGAUUCCUAUUGAGUAAAUUUCUCUUUGGACAACCUUUUAGUAUCGAUGUUUCGCUUUGAACCACUCUUUAAGAGAUAAUCCAU
Sequence
(XR_003242038.1):
AGCGGACGAGCGGACGCGCUAUUCUAGCGCAGAAACACCGCCUCUAAGCGCUAUCCCCGCCACUGGACACAACCCGAUGACACCGCUGCCGAGCCAACGCCUCCUCGCACGCUUCUGUCGCUACUAUAGCACACGCUACGGAAGCCGCUACUCCUCCCACCACCUACCUGCAAAUUGUGCGCUAGCUGCCGCCGUGCGCCUUCUCUCAUUGCAAAUCACGUCAUCCCACCGCAGAUCGUAGCCUCCCCCACCGGCGCCGAGGUAGGAGCGCCCUUCCUGCCGUCCUACUCCGAUGUGAAAAGGAUUUGCUUACCGUCCUGCACGGUGUUGUUCCUCAAUCUUCGCAGUAGCGUCCUCAGUCGUUGCUGCUCCGCCGGCCGUGGUGGCGCAUGCUCUUCCUUCAAUCUCUCGGUUCAUAACUCAUGGUUCAGACUCCUUAGCCCACCGACACGCCAUCCAUCUCCAUCUCCACCAAGAAGAUGAAGGACGCUUGAUUUGGCCGCCUCGCUUUGAUUUGCCCGUCGAUCAUCUGUUGCAGGGUCAAUCGUGGAUACAGUACUUUUUAUCUGAACAAAUAUUGGCCUUUUGCUUUUUUGUGUGUUGAUUUUCAGUAUGCAUUUGUGUUUUGUCUUCAAAUUAUGUGGCGAAUUGUAAUCCAUGGAAAUCUCUUAAACAGUUGAUAGAAUUGUUGAUGCUAAUUCCCUUUGCGUGAGUUGCAGGUGUUCAGCAAAAUCCUGCUUAGGUACUGUCUCUUGCAAGCAAUUUGAUCCAUUGUGUUCUCCUUUCUUCACGAAUUCAGGGCACAGUCCAGUUUGCUGACACUAAACACUUCAAUGUUAUACAUAGUUCAUACUCUUUCUCUGCAGGUGGUCACUUAUUUCUACCUUUCUGUCUACUACAAUGGAUAGCGCCACUGGAAGCUCCACACCAAAUCCAGUGGAAUGAACAGGCCUCCAGCGUUGUUUCCAGGUGAAGUGAUUUAUCUGCCACCAGCAGUCAACACCUUCGUUUGUUUCAUGCCUUGUGAUAAUCUGUGCCUCAGAAAUCCUCCACUUCGCCCUACUAUUAUGUCAGGUUGACAUUGUAGACAACAACUGAACAUUUUGCUAAAAUCUUGUCAUGGUUCACCAUGGCAUUUCACUGUUAGGUACACUGUUUUUAAGAGCUAUUACUACAGUAUAUAUUGGACUAUUGAGAAUACUCGACCCCUUGCUCCAUAUAUACAUCAUGAUGACGUCCAAUUAUGUGUUGCUCAAUCCUGAAGAGAAAACCGACAAGACAAUUGUGCAGCAGAAAUGCAGGUGUUGCUGCUAAGUAACAUCAGGGGUGCUAGAGCUUAGUCAAGAUGCCUGGUGGCGGAGCUGAUGAUUUGGAGGCUUGGAGCAAACAUAUAGCGUGCUGACGAUGACCCUGUAUGCAUGAUUCCUAUUGAGUAAAUUUCUCUUUGGACAACCUUUUAGUAUCGAUGUUUCGCUUUGAACCACUCUUUAAGAGAUAAUCCAU
Sequence
(XR_003242039.1):
CGAGCGGACGAGCGGACGCGCUAUUCUAGCGCAGAAACACCGCCUCUAAGCGCUAUCCCCGCCACUGGACACAACCCGAUGACACCGCUGCCGAGCCAACGCCUCCUCGCACGCUUCUGUCGCUACUAUAGCACACGCUACGGAAGCCGCUACUCCUCCCACCACCUACCUGCAAAUUGUGCGCUAGCUGCCGCCGUGCGCCUUCUCUCAUUGCAAAUCACGUCAUCCCACCGCAGAUCGUAGCCUCCCCCACCGGCGCCGAGUAGCGUCCUCAGUCGUUGCUGCUCCGCCGGCCGUGGUGGCGCAUGCUCUUCCUUCAAUCUCUCGGUUCAUAACUCAUGGUUCAGACUCCUUAGCCCACCGACACGCCAUCCAUCUCCAUCUCCACCAAGAAGAUGAAGGACGCUUGAUUUGGCCGCCUCGCUUUGAUUUGCCCGUCGAUCAUCUGUUGCAGGGUCAAUCGUGGAUACAGUACUUUUUAUCUGAACAAAUAUUGGCCUUUUGCUUUUUUGUGUGUUGAUUUUCAGUAUGCAUUUGUGUUUUGUCUUCAAAUUAUGUGGCGAAUUGUAAUCCAUGGAAAUCUCUUAAACAGUUGAUAGAAUUGUUGAUGCUAAUUCCCUUUGCGUGAGUUGCAGGUGUUCAGCAAAAUCCUGCUUAGGUACUGUCUCUUGCAAGCAAUUUGAUCCAUUGUGUUCUCCUUUCUUCACGAAUUCAGGGCACAGUCCAGUUUGCUGACACUAAACACUUCAAUGUUAUACAUAGUUCAUACUCUUUCUCUGCAGGUGGUCACUUAUUUCUACCUUUCUGUCUACUACAAUGGAUAGCGCCACUGGAAGCUCCACACCAAAUCCAGUGGAAUGAACAGGCCUCCAGCGUUGUUUCCAGGUGAAGUGAUUUAUCUGCCACCAGCAGUCAACACCUUCGUUUGUUUCAUGCCUUGUGAUAAUCUGUGCCUCAGAAAUCCUCCACUUCGCCCUACUAUUAUGUCAGGUUGACAUUGUAGACAACAACUGAACAUUUUGCUAAAAUCUUGUCAUGGUUCACCAUGGCAUUUCACUGUUAGGUACACUGUUUUUAAGAGCUAUUACUACAGUAUAUAUUGGACUAUUGAGAAUACUCGACCCCUUGCUCCAUAUAUACAUCAUGAUGACGUCCAAUUAUGUGUUGCUCAAUCCUGAAGAGAAAACCGACAAGACAAUUGUGCAGAAAUGCAGGUGUUGCUGCUAAGUAACAUCAGGGGUGCUAGAGCUUAGUCAAGAUGCCUGGUGGCGGAGCUGAUGAUUUGGAGGCUUGGAGCAAACAUAUAGCGUGCUGACGAUGACCCUGUAUGCAUGAUUCCUAUUGAGUAAAUUUCUCUUUGGACAACCUUUUAGUAUCGAUGUUUCGCUUUGAACCACUCUUUAAGAGAUAAUCCAU
Sequence
(XR_003242040.1):
CGAGCGGACGAGCGGACGCGCUAUUCUAGCGCAGAAACACCGCCUCUAAGCGCUAUCCCCGCCACUGGACACAACCCGAUGACACCGCUGCCGAGCCAACGCCUCCUCGCACGCUUCUGUCGCUACUAUAGCACACGCUACGGAAGCCGCUACUCCUCCCACCACCUACCUGCAAAUUGUGCGCUAGCUGCCGCCGUGCGCCUUCUCUCAUUGCAAAUCACGUCAUCCCACCGCAGAUCGUAGCCUCCCCCACCGGCGCCGAGCGUCCUCAGUCGUUGCUGCUCCGCCGGCCGUGGUGGCGCAUGCUCUUCCUUCAAUCUCUCGGUUCAUAACUCAUGGUUCAGACUCCUUAGCCCACCGACACGCCAUCCAUCUCCAUCUCCACCAAGAAGAUGAAGGACGCUUGAUUUGGCCGCCUCGCUUUGAUUUGCCCGUCGAUCAUCUGUUGCAGGGUCAAUCGUGGAUACAGUACUUUUUAUCUGAACAAAUAUUGGCCUUUUGCUUUUUUGUGUGUUGAUUUUCAGUAUGCAUUUGUGUUUUGUCUUCAAAUUAUGUGGCGAAUUGUAAUCCAUGGAAAUCUCUUAAACAGUUGAUAGAAUUGUUGAUGCUAAUUCCCUUUGCGUGAGUUGCAGGUGUUCAGCAAAAUCCUGCUUAGGUACUGUCUCUUGCAAGCAAUUUGAUCCAUUGUGUUCUCCUUUCUUCACGAAUUCAGGGCACAGUCCAGUUUGCUGACACUAAACACUUCAAUGUUAUACAUAGUUCAUACUCUUUCUCUGCAGGUGGUCACUUAUUUCUACCUUUCUGUCUACUACAAUGGAUAGCGCCACUGGAAGCUCCACACCAAAUCCAGUGGAAUGAACAGGCCUCCAGCGUUGUUUCCAGGUGAAGUGAUUUAUCUGCCACCAGCAGUCAACACCUUCGUUUGUUUCAUGCCUUGUGAUAAUCUGUGCCUCAGAAAUCCUCCACUUCGCCCUACUAUUAUGUCAGGUUGACAUUGUAGACAACAACUGAACAUUUUGCUAAAAUCUUGUCAUGGUUCACCAUGGCAUUUCACUGUUAGGUACACUGUUUUUAAGAGCUAUUACUACAGUAUAUAUUGGACUAUUGAGAAUACUCGACCCCUUGCUCCAUAUAUACAUCAUGAUGACGUCCAAUUAUGUGUUGCUCAAUCCUGAAGAGAAAACCGACAAGACAAUUGUGCAGAAAUGCAGGUGUUGCUGCUAAGUAACAUCAGGGGUGCUAGAGCUUAGUCAAGAUGCCUGGUGGCGGAGCUGAUGAUUUGGAGGCUUGGAGCAAACAUAUAGCGUGCUGACGAUGACCCUGUAUGCAUGAUUCCUAUUGAGUAAAUUUCUCUUUGGACAACCUUUUAGUAUCGAUGUUUCGCUUUGAACCACUCUUUAAGAGAUAAUCCAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
95.73%
ME_num:
MEP:
3.86%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.96
Avg Expression:
1.25
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.47798832006905 | 0.0433598055846079 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.64397005945213 | 0.0426193334584715 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.45388319126505 | 0.0453915169004156 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.06339460092959 | 0.0222045042231808 |