OSA-LNC107277960


Function Link


Basic Info

Chr:

Chr4

Start:

24168402

End:

24170969

Strand:

+

Ref_name:

LOC107277960

Sequence
(XR_001545215.2):

CCGAGCGGACGAGCGGACGCGCUAUUCUAGCGCAGAAACACCGCCUCUAAGCGCUAUCCCCGCCACUGGACACAACCCGAUGACACCGCUGCCGAGCCAACGCCUCCUCGCACGCUUCUGUCGCUACUAUAGCACACGCUACGGAAGCCGCUACUCCUCCCACCACCUACCUGCAAAUUGUGCGCUAGCUGCCGCCGUGCGCCUUCUCUCAUUGCAAAUCACGUCAUCCCACCGCAGAUCGUAGCCUCCCCCACCGGCGCCGAGGUAGGAGCGCCCUUCCUGCCGUCCUACUCCGAUGUGAAAAGGAUUUGCUUACCGUCCUGCACGGUGUUGUUCCUCAAUCUUCGCAGUAGCGUCCUCAGUCGUUGCUGCUCCGCCGGCCGUGGUGGCGCAUGCUCUUCCUUCAAUCUCUCGGUUCAUAACUCAUGGUUCAGACUCCUUAGCCCACCGACACGCCAUCCAUCUCCAUCUCCACCAAGAAGAUGAAGGACGCUUGAUUUGGCCGCCUCGCUUUGAUUUGCCCGUCGAUCAUCUGUUGCAGGGUCAAUCGUGGAUACAGUACUUUUUAUCUGAACAAAUAUUGGCCUUUUGCUUUUUUGUGUGUUGAUUUUCAGUAUGCAUUUGUGUUUUGUCUUCAAAUUAUGUGGCGAAUUGUAAUCCAUGGAAAUCUCUUAAACAGUUGAUAGAAUUGUUGAUGCUAAUUCCCUUUGCGUGAGUUGCAGGUGUUCAGCAAAAUCCUGCUUAGGUACUGUCUCUUGCAAGCAAUUUGAUCCAUUGUGUUCUCCUUUCUUCACGAAUUCAGGGCACAGUCCAGUUUGCUGACACUAAACACUUCAAUGUUAUACAUAGUUCAUACUCUUUCUCUGCAGGUGGUCACUUAUUUCUACCUUUCUGUCUACUACAAUGGAUAGCGCCACUGGAAGCUCCACACCAAAUCCAGUGGAAUGAACAGGCCUCCAGCGUUGUUUCCAGGUGAAGUGAUUUAUCUGCCACCAGCAGUCAACACCUUCGUUUGUUUCAUGCCUUGUGAUAAUCUGUGCCUCAGAAAUCCUCCACUUCGCCCUACUAUUAUGUCAGUCAGGAAGUUCGGGUAUCACUAUGUACUCCUUCAACCAAUGAAGAUCACAUCAUGGUGUUUCAGAUUUUGUUCGAGUUGACAUUGUAGACAACAACUGAACAUUUUGCUAAAAUCUUGUCAUGGUUCACCAUGGCAUUUCACUGUUAGGUACACUGUUUUUAAGAGCUAUUACUACAGUAUAUAUUGGACUAUUGAGAAUACUCGACCCCUUGCUCCAUAUAUACAUCAUGAUGACGUCCAAUUAUGUGUUGCUCAAUCCUGAAGAGAAAACCGACAAGACAAUUGUGCAGAAAUGCAGGUGUUGCUGCUAAGUAACAUCAGGGGUGCUAGAGCUUAGUCAAGAUGCCUGGUGGCGGAGCUGAUGAUUUGGAGGCUUGGAGCAAACAUAUAGCGUGCUGACGAUGACCCUGUAUGCAUGAUUCCUAUUGAGUAAAUUUCUCUUUGGACAACCUUUUAGUAUCGAUGUUUCGCUUUGAACCACUCUUUAAGAGAUAAUCCAU

Sequence
(XR_001545216.2):

CGGACGAGCGGACGCGCUAUUCUAGCGCAGAAACACCGCCUCUAAGCGCUAUCCCCGCCACUGGACACAACCCGAUGACACCGCUGCCGAGCCAACGCCUCCUCGCACGCUUCUGUCGCUACUAUAGCACACGCUACGGAAGCCGCUACUCCUCCCACCACCUACCUGCAAAUUGUGCGCUAGCUGCCGCCGUGCGCCUUCUCUCAUUGCAAAUCACGUCAUCCCACCGCAGAUCGUAGCCUCCCCCACCGGCGCCGAGGUAGGAGCGCCCUUCCUGCCGUCCUACUCCGAUGUGAAAAGGAUUUGCUUACCGUCCUGCACGGUGUUGUUCCUCAAUCUUCGCAGUAGCGUCCUCAGUCGUUGCUGCUCCGCCGGCCGUGGUGGCGCAUGCUCUUCCUUCAAUCUCUCGGUUCAUAACUCAUGGUUCAGACUCCUUAGCCCACCGACACGCCAUCCAUCUCCAUCUCCACCAAGAAGAUGAAGGACGCUUGAUUUGGCCGCCUCGCUUUGAUUUGCCCGUCGAUCAUCUGUUGCAGGGUCAAUCGUGGAUACAGUACUUUUUAUCUGAACAAAUAUUGGCCUUUUGCUUUUUUGUGUGUUGAUUUUCAGUAUGCAUUUGUGUUUUGUCUUCAAAUUAUGUGGCGAAUUGUAAUCCAUGGAAAUCUCUUAAACAGUUGAUAGAAUUGUUGAUGCUAAUUCCCUUUGCGUGAGUUGCAGGUGUUCAGCAAAAUCCUGCUUAGGUACUGUCUCUUGCAAGCAAUUUGAUCCAUUGUGUUCUCCUUUCUUCACGAAUUCAGGGCACAGUCCAGUUUGCUGACACUAAACACUUCAAUGUUAUACAUAGUUCAUACUCUUUCUCUGCAGGUGGUCACUUAUUUCUACCUUUCUGUCUACUACAAUGGAUAGCGCCACUGGAAGCUCCACACCAAAUCCAGUGGAAUGAACAGGCCUCCAGCGUUGUUUCCAGGUGAAGUGAUUUAUCUGCCACCAGCAGUCAACACCUUCGUUUGUUUCAUGCCUUGUGAUAAUCUGUGCCUCAGAAAUCCUCCACUUCGCCCUACUAUUAUGUCAGGUUGACAUUGUAGACAACAACUGAACAUUUUGCUAAAAUCUUGUCAUGGUUCACCAUGGCAUUUCACUGUUAGGUACACUGUUUUUAAGAGCUAUUACUACAGUAUAUAUUGGACUAUUGAGAAUACUCGACCCCUUGCUCCAUAUAUACAUCAUGAUGACGUCCAAUUAUGUGUUGCUCAAUCCUGAAGAGAAAACCGACAAGACAAUUGUGCAGAAAUGCAGGUGUUGCUGCUAAGUAACAUCAGGGGUGCUAGAGCUUAGUCAAGAUGCCUGGUGGCGGAGCUGAUGAUUUGGAGGCUUGGAGCAAACAUAUAGCGUGCUGACGAUGACCCUGUAUGCAUGAUUCCUAUUGAGUAAAUUUCUCUUUGGACAACCUUUUAGUAUCGAUGUUUCGCUUUGAACCACUCUUUAAGAGAUAAUCCAU

Sequence
(XR_003242038.1):

AGCGGACGAGCGGACGCGCUAUUCUAGCGCAGAAACACCGCCUCUAAGCGCUAUCCCCGCCACUGGACACAACCCGAUGACACCGCUGCCGAGCCAACGCCUCCUCGCACGCUUCUGUCGCUACUAUAGCACACGCUACGGAAGCCGCUACUCCUCCCACCACCUACCUGCAAAUUGUGCGCUAGCUGCCGCCGUGCGCCUUCUCUCAUUGCAAAUCACGUCAUCCCACCGCAGAUCGUAGCCUCCCCCACCGGCGCCGAGGUAGGAGCGCCCUUCCUGCCGUCCUACUCCGAUGUGAAAAGGAUUUGCUUACCGUCCUGCACGGUGUUGUUCCUCAAUCUUCGCAGUAGCGUCCUCAGUCGUUGCUGCUCCGCCGGCCGUGGUGGCGCAUGCUCUUCCUUCAAUCUCUCGGUUCAUAACUCAUGGUUCAGACUCCUUAGCCCACCGACACGCCAUCCAUCUCCAUCUCCACCAAGAAGAUGAAGGACGCUUGAUUUGGCCGCCUCGCUUUGAUUUGCCCGUCGAUCAUCUGUUGCAGGGUCAAUCGUGGAUACAGUACUUUUUAUCUGAACAAAUAUUGGCCUUUUGCUUUUUUGUGUGUUGAUUUUCAGUAUGCAUUUGUGUUUUGUCUUCAAAUUAUGUGGCGAAUUGUAAUCCAUGGAAAUCUCUUAAACAGUUGAUAGAAUUGUUGAUGCUAAUUCCCUUUGCGUGAGUUGCAGGUGUUCAGCAAAAUCCUGCUUAGGUACUGUCUCUUGCAAGCAAUUUGAUCCAUUGUGUUCUCCUUUCUUCACGAAUUCAGGGCACAGUCCAGUUUGCUGACACUAAACACUUCAAUGUUAUACAUAGUUCAUACUCUUUCUCUGCAGGUGGUCACUUAUUUCUACCUUUCUGUCUACUACAAUGGAUAGCGCCACUGGAAGCUCCACACCAAAUCCAGUGGAAUGAACAGGCCUCCAGCGUUGUUUCCAGGUGAAGUGAUUUAUCUGCCACCAGCAGUCAACACCUUCGUUUGUUUCAUGCCUUGUGAUAAUCUGUGCCUCAGAAAUCCUCCACUUCGCCCUACUAUUAUGUCAGGUUGACAUUGUAGACAACAACUGAACAUUUUGCUAAAAUCUUGUCAUGGUUCACCAUGGCAUUUCACUGUUAGGUACACUGUUUUUAAGAGCUAUUACUACAGUAUAUAUUGGACUAUUGAGAAUACUCGACCCCUUGCUCCAUAUAUACAUCAUGAUGACGUCCAAUUAUGUGUUGCUCAAUCCUGAAGAGAAAACCGACAAGACAAUUGUGCAGCAGAAAUGCAGGUGUUGCUGCUAAGUAACAUCAGGGGUGCUAGAGCUUAGUCAAGAUGCCUGGUGGCGGAGCUGAUGAUUUGGAGGCUUGGAGCAAACAUAUAGCGUGCUGACGAUGACCCUGUAUGCAUGAUUCCUAUUGAGUAAAUUUCUCUUUGGACAACCUUUUAGUAUCGAUGUUUCGCUUUGAACCACUCUUUAAGAGAUAAUCCAU

Sequence
(XR_003242039.1):

CGAGCGGACGAGCGGACGCGCUAUUCUAGCGCAGAAACACCGCCUCUAAGCGCUAUCCCCGCCACUGGACACAACCCGAUGACACCGCUGCCGAGCCAACGCCUCCUCGCACGCUUCUGUCGCUACUAUAGCACACGCUACGGAAGCCGCUACUCCUCCCACCACCUACCUGCAAAUUGUGCGCUAGCUGCCGCCGUGCGCCUUCUCUCAUUGCAAAUCACGUCAUCCCACCGCAGAUCGUAGCCUCCCCCACCGGCGCCGAGUAGCGUCCUCAGUCGUUGCUGCUCCGCCGGCCGUGGUGGCGCAUGCUCUUCCUUCAAUCUCUCGGUUCAUAACUCAUGGUUCAGACUCCUUAGCCCACCGACACGCCAUCCAUCUCCAUCUCCACCAAGAAGAUGAAGGACGCUUGAUUUGGCCGCCUCGCUUUGAUUUGCCCGUCGAUCAUCUGUUGCAGGGUCAAUCGUGGAUACAGUACUUUUUAUCUGAACAAAUAUUGGCCUUUUGCUUUUUUGUGUGUUGAUUUUCAGUAUGCAUUUGUGUUUUGUCUUCAAAUUAUGUGGCGAAUUGUAAUCCAUGGAAAUCUCUUAAACAGUUGAUAGAAUUGUUGAUGCUAAUUCCCUUUGCGUGAGUUGCAGGUGUUCAGCAAAAUCCUGCUUAGGUACUGUCUCUUGCAAGCAAUUUGAUCCAUUGUGUUCUCCUUUCUUCACGAAUUCAGGGCACAGUCCAGUUUGCUGACACUAAACACUUCAAUGUUAUACAUAGUUCAUACUCUUUCUCUGCAGGUGGUCACUUAUUUCUACCUUUCUGUCUACUACAAUGGAUAGCGCCACUGGAAGCUCCACACCAAAUCCAGUGGAAUGAACAGGCCUCCAGCGUUGUUUCCAGGUGAAGUGAUUUAUCUGCCACCAGCAGUCAACACCUUCGUUUGUUUCAUGCCUUGUGAUAAUCUGUGCCUCAGAAAUCCUCCACUUCGCCCUACUAUUAUGUCAGGUUGACAUUGUAGACAACAACUGAACAUUUUGCUAAAAUCUUGUCAUGGUUCACCAUGGCAUUUCACUGUUAGGUACACUGUUUUUAAGAGCUAUUACUACAGUAUAUAUUGGACUAUUGAGAAUACUCGACCCCUUGCUCCAUAUAUACAUCAUGAUGACGUCCAAUUAUGUGUUGCUCAAUCCUGAAGAGAAAACCGACAAGACAAUUGUGCAGAAAUGCAGGUGUUGCUGCUAAGUAACAUCAGGGGUGCUAGAGCUUAGUCAAGAUGCCUGGUGGCGGAGCUGAUGAUUUGGAGGCUUGGAGCAAACAUAUAGCGUGCUGACGAUGACCCUGUAUGCAUGAUUCCUAUUGAGUAAAUUUCUCUUUGGACAACCUUUUAGUAUCGAUGUUUCGCUUUGAACCACUCUUUAAGAGAUAAUCCAU

Sequence
(XR_003242040.1):

CGAGCGGACGAGCGGACGCGCUAUUCUAGCGCAGAAACACCGCCUCUAAGCGCUAUCCCCGCCACUGGACACAACCCGAUGACACCGCUGCCGAGCCAACGCCUCCUCGCACGCUUCUGUCGCUACUAUAGCACACGCUACGGAAGCCGCUACUCCUCCCACCACCUACCUGCAAAUUGUGCGCUAGCUGCCGCCGUGCGCCUUCUCUCAUUGCAAAUCACGUCAUCCCACCGCAGAUCGUAGCCUCCCCCACCGGCGCCGAGCGUCCUCAGUCGUUGCUGCUCCGCCGGCCGUGGUGGCGCAUGCUCUUCCUUCAAUCUCUCGGUUCAUAACUCAUGGUUCAGACUCCUUAGCCCACCGACACGCCAUCCAUCUCCAUCUCCACCAAGAAGAUGAAGGACGCUUGAUUUGGCCGCCUCGCUUUGAUUUGCCCGUCGAUCAUCUGUUGCAGGGUCAAUCGUGGAUACAGUACUUUUUAUCUGAACAAAUAUUGGCCUUUUGCUUUUUUGUGUGUUGAUUUUCAGUAUGCAUUUGUGUUUUGUCUUCAAAUUAUGUGGCGAAUUGUAAUCCAUGGAAAUCUCUUAAACAGUUGAUAGAAUUGUUGAUGCUAAUUCCCUUUGCGUGAGUUGCAGGUGUUCAGCAAAAUCCUGCUUAGGUACUGUCUCUUGCAAGCAAUUUGAUCCAUUGUGUUCUCCUUUCUUCACGAAUUCAGGGCACAGUCCAGUUUGCUGACACUAAACACUUCAAUGUUAUACAUAGUUCAUACUCUUUCUCUGCAGGUGGUCACUUAUUUCUACCUUUCUGUCUACUACAAUGGAUAGCGCCACUGGAAGCUCCACACCAAAUCCAGUGGAAUGAACAGGCCUCCAGCGUUGUUUCCAGGUGAAGUGAUUUAUCUGCCACCAGCAGUCAACACCUUCGUUUGUUUCAUGCCUUGUGAUAAUCUGUGCCUCAGAAAUCCUCCACUUCGCCCUACUAUUAUGUCAGGUUGACAUUGUAGACAACAACUGAACAUUUUGCUAAAAUCUUGUCAUGGUUCACCAUGGCAUUUCACUGUUAGGUACACUGUUUUUAAGAGCUAUUACUACAGUAUAUAUUGGACUAUUGAGAAUACUCGACCCCUUGCUCCAUAUAUACAUCAUGAUGACGUCCAAUUAUGUGUUGCUCAAUCCUGAAGAGAAAACCGACAAGACAAUUGUGCAGAAAUGCAGGUGUUGCUGCUAAGUAACAUCAGGGGUGCUAGAGCUUAGUCAAGAUGCCUGGUGGCGGAGCUGAUGAUUUGGAGGCUUGGAGCAAACAUAUAGCGUGCUGACGAUGACCCUGUAUGCAUGAUUCCUAUUGAGUAAAUUUCUCUUUGGACAACCUUUUAGUAUCGAUGUUUCGCUUUGAACCACUCUUUAAGAGAUAAUCCAU


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

471

LEP:

95.73%

ME_num:

19

MEP:

3.86%

HE_num:

1

HEP:

0.2%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.96

Avg Expression:

1.25

Tip: OSA-LNC107277960 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-4.477988320069050.0433598055846079
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-4.643970059452130.0426193334584715
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-4.453883191265050.0453915169004156
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-5.063394600929590.0222045042231808