Chr:
Chr6
Start:
23066448
End:
23068072
Strand:
+
Ref_name:
LOC107277900
Sequence
(XR_001546630.2):
CGACGAAGAGACACGAUUGUGGUACUCCUACUCGCCUCCGUGAGUUCUAUAUAUAUAUAUGCUGCUCGCCUGAACAUCUGGCUUGUUAGUUUGUAAACCAUCAGUAAUAUAUAUAGCAGCAGAUAGUUAUACCAUCACCAGCUCGGCACACGUCGUACAGGAUGCCGGCGAUCACCGGCCGACGGCCGGUGGCUCGAUUACGCGCGAUAAUCCAGCUCGUGCUGCUGGUUCUUGUGAUCGGCAGUGGCAUCCUCGUCGUGCCGGCGGCUGGGAGCACCGGCAAAACCGGCGGCACGGGAAGCAGUGGCAAUGGUCGACCAACUGGUACGGGUGGUCCGUCUACCGCAUCACCGUACAGGACAUAUGGCAGACGGGUUAGUGCGGUUAGUGGUUUCAGCGUAGGCUAGCCAUGACAGGUCUCGGAGGGCAAUGGCCGCAGGCGGCGGUGACGAAUGCUCGUGUCUUAAUUAGCACAGAAGGGCACACGAGAGCAGCAGGCGCGUAUGUCGCAUGUCUGGUUCAUUCGUUAUAUGAAAACUAUCUGAAUUCACCGUCGAAAAUUGUGCCGUCAUAUAUACCGAUACGUAGCUCAGUUUGUUGACUAGUUUCUGUAAUAAGAUGAAUUUACUAUUCACGGUGUGUAGAACUGUAGAUUAACUAUAUAUAUGUGACUGCAGGCUGAAAUUUAUUUUGAUUUCAGCCGAAUUUCUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
63.82%
ME_num:
MEP:
29.47%
HE_num:
HEP:
6.5%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.83
Avg Expression:
3.23
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -6.07106997264441 | 0.00798242300153302 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -3.53301771956008 | 0.00990097883673794 |
| 3 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -4.12926391398975 | 1.32613794342684e-10 |
| 4 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -4.12934753405052 | 1.39248509120715e-10 |
| 5 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -4.12948943673907 | 1.34307301259296e-10 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.6873648308184 | 0.000584638384378359 |
| 7 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -4.35750548085174 | 4.31145711144257e-09 |