Chr:
Chr1
Start:
29521594
End:
29523287
Strand:
-
Ref_name:
LOC107277875
Sequence
(XR_001544522.2):
CACUAGAUCCCGGUCCCAGCCGCCCGCGUCGUUCCUCUUCUUCCUCAAAACGCAAUCUCUCCGAAUUCUCCCCAUCAUCGCCAUCGACGGCUUCCCAGGCCGGGGGAGGAAGAACUCCGUUUCGGACCCGGCGUCCGUGUCCGUUAUCGUCCGUCGGUUUCCGUGUCCGAUUCUGUUCUUCUCCAUAUGUUGAUAUAGAUAGAUCGAUCGAUCGGAUCCCCCACCCACACACCACACCACAUCCGCCGCGACACAGCAAGAAGAGGAGAGCAGAGGAGAGGAAGCAGAGUGUUGGAAAGAAACAAGGAAUAAGCCGGCGGCCGGAGAUGAAGUCCGGCAAGCCGAUCUGCGAGAAGGUGAAGCCCGCAGUAGCAGUCCGCAUAUUCGGCGGGCUACGUUACGCUCCGCCGGAUGGCCUGGUCGUCAACAAUCCUCUACUGGCUGCCUUCAUCCGAGCUGUUUACACCUUAUACAUGGCUACGACAGUGUUUCUCUACAUUUUUGGCAUGGUUACUGCUAUCAAGGAAUACGAAAUGUUGGUGGCACUGUCCAUAAUUGUAGUCAUGCAGCCCUUCUUCAUAUUGAUGUGGAUUGCAGCACCAUUCCUUAGGACUGUAGCAAUUGUGAAAUAUGCGAUGGGACUCCCUGAUAGUAAUAACGUCAACAGAAUUACAACAGGAAGGAUGUCAGCCCUAGCCUGAACAAAGUAUGCCUAAGAAGGGUUGUUCAAGUUUAUCAUAAUUGUGCCCUCUUUAGAAAUAGGGCACUUUAAGUUGCUGUCUUCUUUAGAAGACCUUUUAGAUUCAGAUGUGUAUUUCUUAGAACAUAUGUUAACAGUGGCGUAGCUAGCUUAUAGUCCAUAUGGGCACAGGACUACCCUAGAUUUUAGCAUAGAGACCUUAAUCCCUACUAUCAAAAUUCAUGGAUCAUUUGCAAAACAAACUAUACAUACUUAUCAUGCUUCUUAAACUUGUUAGUUGGGACUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
3.86%
ME_num:
MEP:
48.17%
HE_num:
HEP:
47.76%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.64
Avg Expression:
11.35
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.41989397601396 | 0.00514267640581456 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.54415828051032 | 0.000444710800517419 |
| 3 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.31865739012002 | 0.00754819822866809 |
| 4 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.31858102514822 | 0.00771934884467013 |
| 5 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.31845339335602 | 0.00759181512613816 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.2905295867423 | 5.63449827477649e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.08544913953567 | 0.0227942516954273 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.2737281153989 | 0.0023727966140868 |