OSA-LNC107277800


Function Link


Basic Info

Chr:

Chr12

Start:

9493185

End:

9499298

Strand:

-

Ref_name:

LOC107277800

Sequence
(XR_001541908.2):

UCCCAGAACCUUAUCUCCUCCCAGCCGCAUACUACUCGUACGCUUCUCUCUCCCCCUCUCGCGUUUCUCUCCCUCCCGUUCCUCCCCAUCGCCCCUCACCCCUCUGGAUCGAAGGCAUCGACGCGGCGGCGUCCAGAUGACCGACCCUAGCAAGCUUCCAAGUCCCUCCUUACCUCCCUCCCGCUCCUCCCCGCACGUCCCUCCUUGCUCCACGCUGCUCCACCAGGCUCCCACAUCUCCCUGCCAAGCUCCCCGUCCAACUAGUUGCUUCCACUCAUAUGCGGCGGGGGAGGGUUAUGAGCAGUUAGAUCCGAUGCCAGAGACGGCUGGGGUGGAAGUGUUUGGCUUGAUAGCGGCGUUUAUGGAAGCGGCGGAAAAUUUUAGGGUUUUGAUUCAAGAGACACGAGCCAAGGCGGAGGAGGCGUGUCGGCUUGCGGUUGUGAUCCAAAAGGCGGUGGCGGCGGCGACUGCGGCGGUGGCGGAGGUUUGCAAGAAGGCGGUGGGUGGAGGAAGUUGGGAUGCGGCAGCGGCGGUGGAGGUUUGCAAGAAGGGGGCGGCGGUGGGUGGAGGCAGUUGGGAUGCGGCGGCGGCGUCGGAGGUUUGCAAGGCGGCUGAUGUAAUGCUCAAGGAGGUGGCGGCGCCCGCGGAUCUGAUAAAGGAGGGGGCAGUGGAGGACGAGGCUGACCAGCCUCUUAUUCUAAUUCUGGCAUCAACAACUAGGAUCUUAGGGUCUUUGGCGGCGGUAUGCGUGGAUUGACUCAAAGGACAAUGUUGGUUGACGACAGCGACCACACGGCACUGUUUGAGAAGAAGGCAAGCGUUAAGCAAAUCGGCAUCGAGGAGAUGAGGGGAAAAGCUAAGGAUGUGAGCAGCGAGGAGGUGAAGUCAAGCGACGAUGAUGAAGACAUGGUCAUUGGGGGAUAUGCGCAAGAUCCAUACGAUGAUAGUGGCCUAGAAGACCUUCUUCAAGACCAAGAUGCAUUGGAAAAAUCGGUAAAGAAAUUUCUGGAGUGUUUUAAGAGUGCAAAAUUUAGAUGAAUGCUUCAAUUAUGUGAUGUUUGUGUGCUGGUUUGGUGGUUAUGAAUGGUGGCCUAACAAAGCAACUCGAUAAGUAUCCUUUUGGUAUUGUAUGAAAUUAUGUGUAAAUAUGGUAUUAGAUAAGAUUAGGUGGUUAUGAAUAGAAGCCUUGACAGUCUGUCAAAGUAGGCACACUUUUGGUAUUGUAUGAAAGCAUGUGUAAUUACGGUAGUAGAUGAUAUUAGGUGGUUAUGAUGGUAAUGUAUCGAAAUAUUUCAAAUUAUGAUGGUUUAUGGUGGUGACUGAAAUUAAGGAGACGUUUGUACCAUGAUUUACUCUAAUGCUGAUAUUACAAUGUCAUAUGUACAAUCUGAAAUUAAGCCAAAAGCUGAAACCAUCGUAAAACUUCCUAUAUUACAUAGUCCAAAAGUUCAAACCAUCAUAAAACUUUAUAUUACAUAUUCCAAAAGCUGAAACCACUAUAAAACUUCCUAUAUUACAUGAUUUGUUGUAUUUACUUGCGUAAUACUGAUCUUACUUUACCAUAUAUACAACCUGACAUUUAACCAAAAGCUGAAACAAUGAUAGAGCUUCUCAUGUUGCAUGAUUUACUGCACUUGGUUGGAUAAUGCUGUUCUGAACUUGUCAUAUAGCUGACGACCACAACUAAGGGUAUUAGGGAGAAUGUCUAGACGCUCUAGCCUCUCUUUACCCAUAUGAGGAAUCCUGUAUCCAUUUCCACCAUCAACUUCCAUAACCUCUAACAAGCAAGAUUGUAGAGUUAGGAAAACCCUAUUCAGCUUGUUGUCAUCAUAAGCCUGAAAUUCCUGCUCAACAUUAUCUAUUAGCUCAUCUAUAUUCCUAGAUAUCCUUCUAUAUGUUAAUGAUUGCAGAGAUGCAAAGAACCCAAGAUCUAGUGCAUUCAUAUCUGUGGAAUUAGGAGGCUGAUACAUAAGGCGGAUGUCAAACCCUGUUUGAGAUACUGCAUAGGCAAAUUGAGGAUCAUCCACCGGCACAUGAGACGGAGCAUUAUCUUGCUGAAUCCAUAUAGUGUUGUGUCGCUCUUCUCGAGGCCAACUUGAUAUAAUAGCUGGUAGGACUUUAGCAAUUAGAAAUGAUCUGACAGUAUCUCGAUCAACCUUGAUUGUCUUGGUGACAAGAGUCCCUCUUGGCCUGUUUUGGCUUGCCCUUUGUGCUGGUUCCUAAAUAGUAAAUUAUGUAAGUUAGAUUAACAAUUAAGUUUUGCAUCACAAGCCUAUCUUGCCGUCACUAAUUAAAAAUGCAUAUAUGAAGAUGUUAUGAUACCUUUUUGGUGAAAGGCCACAAGCCUAUCUUGCCGUCAAAAGUGCAAAUACCUUCUUCAUUGUAUCUAGGCCUAGCCACUGCUGCCAAGAACAUCACUUUAUCAAUAGAAUUCUUGUUUUGCACAGGUCUGUAUGGAUCAUCCUCCCAAUGGACCAUGUAAAAAUUUCUUGUCUUCUUAGUGGUAUUGAACCAUUUUUCAUCGAUGUGCACAAUAUUGCGCAUAUCAACAAACUUGGGUUCAUCUAGCAAAGUAUGCCAAUCUAACAUGGAAAGACACCAUCGCAGCCUUGACCGUUUGUUCUCUUCCUUCAACAAUGGCUUUAAUGUGUUCGAGUGACGUCUUAGUAUCCUUUUUUCAACAUCCUAUGCAGCGUGCUCUUUGGUACACCUGCGGCUGAUGCAAAUGACCGUAAAGUGCCCCUUAGUUGCAAGGGAACAUUAGCAAUAUCUGAUAGGUUGAUUUCAUUCUUUUUGUGACCAGAAUUUUUUUUCUUUCUAGAGCUUACAUCGAUUGGUAUUCCUUGGGCACGACAUUGCUUCGCUCUUCUCCAAAAAUCUUGCACUCUAGCUCUUUUCACAUUAAACAUUUCUGCAACUUCAGUAGUAGCCUUUUUCCUUAGGAUUCCGUUGGUAGUUUUCCCAACCAAUGCUAUAUAUAUCUAUUGCCUUUGUAUAUUGGUCAGAUUUUUGUAUGGCUGUUCAUCUUCCUGAUCUGAAUCAUCCAACUCCUCGUGUUCGAAAACAAUGUCCACAUCACCGGCAUACAAACCGUACUCCUACAUGUCUACAACAAUAAUUUCCAGGUGUUCCUUCAAGGCAUCGGAGUUGAUAUCAAAAGGAAAGGCAUUAUGGAUGUGACCUCCAUAAAGUUGUAGAACUUGAUCCAUUGCAUCGCCAUUGUCUACAAUAACAAUUACCAUGUACAACAUCAACACAGGAGUUUAUGAGAUCAAAGAACCACAAUCAAGGUGCAUCAAUAUUGAGAUCAAAAGGAAACACAUGUUUGUCACCUCCCUGGACAUCACCUCCAAGUUGAUCCUCCUCCUGACCAAGAUGGAUUUCAACUUCAGCAAUUUCGUCAUUGAGGUCAGGCAAAGCCUGUUCAUCUCCCUCAUCUACUGGCUUGUUUAGAUCAAGAGCCAUGGAGGUGAUUUUGAAGACUCAUGCAGUGAUUCAGUGGGAGGGAAACUUGCUAUUGAGGUUCAUUUCAAACUUAUAUAGGGUUGUUGUAGUGGUGUGUGCUGAAAUUUGUAAUGCUUGCCGCCAAUGAAGCAAUGCUAAGUUUCAAAAUAUUUGGCGCCCUGGUUGCUGUGUAUUAUUUGUAUAUUGAGCACUUAAUGGCUGCAUCAGAAAUAUUCUUAUCCAA

Sequence
(XR_003239880.1):

UCUCCUCCCAGCCGCAUACUACUCGUACGCUUCUCUCUCCCCCUCUCGCGUUUCUCUCCCUCCCGUUCCUCCCCAUCGCCCCUCACCCCUCUGGAUCGAAGGCAUCGACGCGGCGGCGUCCAGAUGACCGACCCUAGCAAGCUUCCAAGUCCCUCCUUACCUCCCUCCCGCUCCUCCCCGCACGUCCCUCCUUGCUCCACGCUGCUCCACCAGGCUCCCACAUCUCCCUGCCAAGCUCCCCGUCCAACUAGUUGCUUCCACUCAUAUGCGGCGGGGGAGGGUUAUGAGCAGUUAGAUCCGAUGCCAGAGACGGCUGGGGUGGAAGUGUUUGGCUUGAUAGCGGCGUUUAUGGAAGCGGCGGAAAAUUUUAGGGUUUUGAUUCAAGAGACACGAGCCAAGGCGGAGGAGGCGUGUCGGCUUGCGGUUGUGAUCCAAAAGGCGGUGGCGGCGGCGACUGCGGCGGUGGCGGAGGUUUGCAAGAAGGCGGUGGGUGGAGGAAGUUGGGAUGCGGCAGCGGCGGUGGAGGUUUGCAAGAAGGGGGCGGCGGUGGGUGGAGGCAGUUGGGAUGCGGCGGCGGCGUCGGAGGUUUGCAAGGCGGCUGAUGUAAUGCUCAAGGAGGUGGCGGCGCCCGCGGAUCUGAUAAAGGAGGGGGCAGUGGAGGACGAGGCUGACCAGCCUCUUAUUCUAAUUCUGGCAUCAACAACUAGGAUCUUAGGGUCUUUGGCGGCGGUAUGCGUGGAUUGACUCAAAGGACAAUGUUGGUUGACGACAGCGACCACACGGCACUGUUUGAGAAGAAGGCAAGCGUUAAGCAAAUCGGCAUCGAGGAGAUGAGGGGAAAAGCUAAGGAUGUGAGCAGCGAGGAGGUGAAGUCAAGCGACGAUGAUGAAGACAUGGUCAUUGGGGGAUAUGCGCAAGAUCCAUACGAUGAUAGUGGCCUAGAAGACCUUCUUCAAGACCAAGAUGCAUUGGAAAAAUCGAUUUUUGUAUGGCUGUUCAUCUUCCUGAUCUGAAUCAUCCAACUCCUCGUGUUCGAAAACAAUGUCCACAUCACCGGCAUACAAACCGUACUCCUACAUGUCUACAACAAUAAUUUCCAGGUGUUCCUUCAAGGCAUCGGAGUUGAUAUCAAAAGGAAAGGCAUUAUGGAUGUGACCUCCAUAAAGUUGUAGAACUUGAUCCAUUGCAUCGCCAUUGUCUACAAUAACAAUUACCAUGUACAACAUCAACACAGGAGUUUAUGAGAUCAAAGAACCACAAUCAAGGUGCAUCAAUAUUGAGAUCAAAAGGAAACACAUGUUUGUCACCUCCCUGGACAUCACCUCCAAGUUGAUCCUCCUCCUGACCAAGAUGGAUUUCAACUUCAGCAAUUUCGUCAUUGAGGUCAGGCAAAGCCUGUUCAUCUCCCUCAUCUACUGGCUUGUUUAGAUCAAGAGCCAUGGAGGUGAUUUUGAAGACUCAUGCAGUGAUUCAGUGGGAGGGAAACUUGCUAUUGAGGUUCAUUUCAAACUUAUAUAGGGUUGUUGUAGUGGUGUGUGCUGAAAUUUGUAAUGCUUGCCGCCAAUGAAGCAAUGCUAAGUUUCAAAAUAUUUGGCGCCCUGGUUGCUGUGUAUUAUUUGUAUAUUGAGCACUUAAUGGCUGCAUCAGAAAUAUUCUUAUCCAA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

452

LEP:

91.87%

ME_num:

33

MEP:

6.71%

HE_num:

6

HEP:

1.22%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

endosprem

Tau :

0.97

Avg Expression:

5.38

Tip: OSA-LNC107277800 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN-2.654528729504513.33795024490039e-11
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-2.993391827394174.5902287965056e-14
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-9.004219036629945.39161980174449e-13
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-8.011048366730655.29757420539483e-10
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN-8.25560380962346.38865372758377e-11
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-8.422036690020732.51267477964923e-11
7Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA-1.488409126306634.19299664815469e-05
8Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN-1.136196627783320.000652451816239198
9Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-4.261222396529612.25823005469371e-18
10Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA-1.658884530431645.42420955097128e-06
11Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-8.816372049583281.32370477309171e-12
12Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-3.847771510339811.38562605375064e-20
13Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-5.289574350819473.18070509335512e-14
14Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-6.255544568819382.96446201165825e-18
15Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN-1.30192184780610.000186661795239943