Chr:
Chr12
Start:
9493185
End:
9499298
Strand:
-
Ref_name:
LOC107277800
Sequence
(XR_001541908.2):
UCCCAGAACCUUAUCUCCUCCCAGCCGCAUACUACUCGUACGCUUCUCUCUCCCCCUCUCGCGUUUCUCUCCCUCCCGUUCCUCCCCAUCGCCCCUCACCCCUCUGGAUCGAAGGCAUCGACGCGGCGGCGUCCAGAUGACCGACCCUAGCAAGCUUCCAAGUCCCUCCUUACCUCCCUCCCGCUCCUCCCCGCACGUCCCUCCUUGCUCCACGCUGCUCCACCAGGCUCCCACAUCUCCCUGCCAAGCUCCCCGUCCAACUAGUUGCUUCCACUCAUAUGCGGCGGGGGAGGGUUAUGAGCAGUUAGAUCCGAUGCCAGAGACGGCUGGGGUGGAAGUGUUUGGCUUGAUAGCGGCGUUUAUGGAAGCGGCGGAAAAUUUUAGGGUUUUGAUUCAAGAGACACGAGCCAAGGCGGAGGAGGCGUGUCGGCUUGCGGUUGUGAUCCAAAAGGCGGUGGCGGCGGCGACUGCGGCGGUGGCGGAGGUUUGCAAGAAGGCGGUGGGUGGAGGAAGUUGGGAUGCGGCAGCGGCGGUGGAGGUUUGCAAGAAGGGGGCGGCGGUGGGUGGAGGCAGUUGGGAUGCGGCGGCGGCGUCGGAGGUUUGCAAGGCGGCUGAUGUAAUGCUCAAGGAGGUGGCGGCGCCCGCGGAUCUGAUAAAGGAGGGGGCAGUGGAGGACGAGGCUGACCAGCCUCUUAUUCUAAUUCUGGCAUCAACAACUAGGAUCUUAGGGUCUUUGGCGGCGGUAUGCGUGGAUUGACUCAAAGGACAAUGUUGGUUGACGACAGCGACCACACGGCACUGUUUGAGAAGAAGGCAAGCGUUAAGCAAAUCGGCAUCGAGGAGAUGAGGGGAAAAGCUAAGGAUGUGAGCAGCGAGGAGGUGAAGUCAAGCGACGAUGAUGAAGACAUGGUCAUUGGGGGAUAUGCGCAAGAUCCAUACGAUGAUAGUGGCCUAGAAGACCUUCUUCAAGACCAAGAUGCAUUGGAAAAAUCGGUAAAGAAAUUUCUGGAGUGUUUUAAGAGUGCAAAAUUUAGAUGAAUGCUUCAAUUAUGUGAUGUUUGUGUGCUGGUUUGGUGGUUAUGAAUGGUGGCCUAACAAAGCAACUCGAUAAGUAUCCUUUUGGUAUUGUAUGAAAUUAUGUGUAAAUAUGGUAUUAGAUAAGAUUAGGUGGUUAUGAAUAGAAGCCUUGACAGUCUGUCAAAGUAGGCACACUUUUGGUAUUGUAUGAAAGCAUGUGUAAUUACGGUAGUAGAUGAUAUUAGGUGGUUAUGAUGGUAAUGUAUCGAAAUAUUUCAAAUUAUGAUGGUUUAUGGUGGUGACUGAAAUUAAGGAGACGUUUGUACCAUGAUUUACUCUAAUGCUGAUAUUACAAUGUCAUAUGUACAAUCUGAAAUUAAGCCAAAAGCUGAAACCAUCGUAAAACUUCCUAUAUUACAUAGUCCAAAAGUUCAAACCAUCAUAAAACUUUAUAUUACAUAUUCCAAAAGCUGAAACCACUAUAAAACUUCCUAUAUUACAUGAUUUGUUGUAUUUACUUGCGUAAUACUGAUCUUACUUUACCAUAUAUACAACCUGACAUUUAACCAAAAGCUGAAACAAUGAUAGAGCUUCUCAUGUUGCAUGAUUUACUGCACUUGGUUGGAUAAUGCUGUUCUGAACUUGUCAUAUAGCUGACGACCACAACUAAGGGUAUUAGGGAGAAUGUCUAGACGCUCUAGCCUCUCUUUACCCAUAUGAGGAAUCCUGUAUCCAUUUCCACCAUCAACUUCCAUAACCUCUAACAAGCAAGAUUGUAGAGUUAGGAAAACCCUAUUCAGCUUGUUGUCAUCAUAAGCCUGAAAUUCCUGCUCAACAUUAUCUAUUAGCUCAUCUAUAUUCCUAGAUAUCCUUCUAUAUGUUAAUGAUUGCAGAGAUGCAAAGAACCCAAGAUCUAGUGCAUUCAUAUCUGUGGAAUUAGGAGGCUGAUACAUAAGGCGGAUGUCAAACCCUGUUUGAGAUACUGCAUAGGCAAAUUGAGGAUCAUCCACCGGCACAUGAGACGGAGCAUUAUCUUGCUGAAUCCAUAUAGUGUUGUGUCGCUCUUCUCGAGGCCAACUUGAUAUAAUAGCUGGUAGGACUUUAGCAAUUAGAAAUGAUCUGACAGUAUCUCGAUCAACCUUGAUUGUCUUGGUGACAAGAGUCCCUCUUGGCCUGUUUUGGCUUGCCCUUUGUGCUGGUUCCUAAAUAGUAAAUUAUGUAAGUUAGAUUAACAAUUAAGUUUUGCAUCACAAGCCUAUCUUGCCGUCACUAAUUAAAAAUGCAUAUAUGAAGAUGUUAUGAUACCUUUUUGGUGAAAGGCCACAAGCCUAUCUUGCCGUCAAAAGUGCAAAUACCUUCUUCAUUGUAUCUAGGCCUAGCCACUGCUGCCAAGAACAUCACUUUAUCAAUAGAAUUCUUGUUUUGCACAGGUCUGUAUGGAUCAUCCUCCCAAUGGACCAUGUAAAAAUUUCUUGUCUUCUUAGUGGUAUUGAACCAUUUUUCAUCGAUGUGCACAAUAUUGCGCAUAUCAACAAACUUGGGUUCAUCUAGCAAAGUAUGCCAAUCUAACAUGGAAAGACACCAUCGCAGCCUUGACCGUUUGUUCUCUUCCUUCAACAAUGGCUUUAAUGUGUUCGAGUGACGUCUUAGUAUCCUUUUUUCAACAUCCUAUGCAGCGUGCUCUUUGGUACACCUGCGGCUGAUGCAAAUGACCGUAAAGUGCCCCUUAGUUGCAAGGGAACAUUAGCAAUAUCUGAUAGGUUGAUUUCAUUCUUUUUGUGACCAGAAUUUUUUUUCUUUCUAGAGCUUACAUCGAUUGGUAUUCCUUGGGCACGACAUUGCUUCGCUCUUCUCCAAAAAUCUUGCACUCUAGCUCUUUUCACAUUAAACAUUUCUGCAACUUCAGUAGUAGCCUUUUUCCUUAGGAUUCCGUUGGUAGUUUUCCCAACCAAUGCUAUAUAUAUCUAUUGCCUUUGUAUAUUGGUCAGAUUUUUGUAUGGCUGUUCAUCUUCCUGAUCUGAAUCAUCCAACUCCUCGUGUUCGAAAACAAUGUCCACAUCACCGGCAUACAAACCGUACUCCUACAUGUCUACAACAAUAAUUUCCAGGUGUUCCUUCAAGGCAUCGGAGUUGAUAUCAAAAGGAAAGGCAUUAUGGAUGUGACCUCCAUAAAGUUGUAGAACUUGAUCCAUUGCAUCGCCAUUGUCUACAAUAACAAUUACCAUGUACAACAUCAACACAGGAGUUUAUGAGAUCAAAGAACCACAAUCAAGGUGCAUCAAUAUUGAGAUCAAAAGGAAACACAUGUUUGUCACCUCCCUGGACAUCACCUCCAAGUUGAUCCUCCUCCUGACCAAGAUGGAUUUCAACUUCAGCAAUUUCGUCAUUGAGGUCAGGCAAAGCCUGUUCAUCUCCCUCAUCUACUGGCUUGUUUAGAUCAAGAGCCAUGGAGGUGAUUUUGAAGACUCAUGCAGUGAUUCAGUGGGAGGGAAACUUGCUAUUGAGGUUCAUUUCAAACUUAUAUAGGGUUGUUGUAGUGGUGUGUGCUGAAAUUUGUAAUGCUUGCCGCCAAUGAAGCAAUGCUAAGUUUCAAAAUAUUUGGCGCCCUGGUUGCUGUGUAUUAUUUGUAUAUUGAGCACUUAAUGGCUGCAUCAGAAAUAUUCUUAUCCAA
Sequence
(XR_003239880.1):
UCUCCUCCCAGCCGCAUACUACUCGUACGCUUCUCUCUCCCCCUCUCGCGUUUCUCUCCCUCCCGUUCCUCCCCAUCGCCCCUCACCCCUCUGGAUCGAAGGCAUCGACGCGGCGGCGUCCAGAUGACCGACCCUAGCAAGCUUCCAAGUCCCUCCUUACCUCCCUCCCGCUCCUCCCCGCACGUCCCUCCUUGCUCCACGCUGCUCCACCAGGCUCCCACAUCUCCCUGCCAAGCUCCCCGUCCAACUAGUUGCUUCCACUCAUAUGCGGCGGGGGAGGGUUAUGAGCAGUUAGAUCCGAUGCCAGAGACGGCUGGGGUGGAAGUGUUUGGCUUGAUAGCGGCGUUUAUGGAAGCGGCGGAAAAUUUUAGGGUUUUGAUUCAAGAGACACGAGCCAAGGCGGAGGAGGCGUGUCGGCUUGCGGUUGUGAUCCAAAAGGCGGUGGCGGCGGCGACUGCGGCGGUGGCGGAGGUUUGCAAGAAGGCGGUGGGUGGAGGAAGUUGGGAUGCGGCAGCGGCGGUGGAGGUUUGCAAGAAGGGGGCGGCGGUGGGUGGAGGCAGUUGGGAUGCGGCGGCGGCGUCGGAGGUUUGCAAGGCGGCUGAUGUAAUGCUCAAGGAGGUGGCGGCGCCCGCGGAUCUGAUAAAGGAGGGGGCAGUGGAGGACGAGGCUGACCAGCCUCUUAUUCUAAUUCUGGCAUCAACAACUAGGAUCUUAGGGUCUUUGGCGGCGGUAUGCGUGGAUUGACUCAAAGGACAAUGUUGGUUGACGACAGCGACCACACGGCACUGUUUGAGAAGAAGGCAAGCGUUAAGCAAAUCGGCAUCGAGGAGAUGAGGGGAAAAGCUAAGGAUGUGAGCAGCGAGGAGGUGAAGUCAAGCGACGAUGAUGAAGACAUGGUCAUUGGGGGAUAUGCGCAAGAUCCAUACGAUGAUAGUGGCCUAGAAGACCUUCUUCAAGACCAAGAUGCAUUGGAAAAAUCGAUUUUUGUAUGGCUGUUCAUCUUCCUGAUCUGAAUCAUCCAACUCCUCGUGUUCGAAAACAAUGUCCACAUCACCGGCAUACAAACCGUACUCCUACAUGUCUACAACAAUAAUUUCCAGGUGUUCCUUCAAGGCAUCGGAGUUGAUAUCAAAAGGAAAGGCAUUAUGGAUGUGACCUCCAUAAAGUUGUAGAACUUGAUCCAUUGCAUCGCCAUUGUCUACAAUAACAAUUACCAUGUACAACAUCAACACAGGAGUUUAUGAGAUCAAAGAACCACAAUCAAGGUGCAUCAAUAUUGAGAUCAAAAGGAAACACAUGUUUGUCACCUCCCUGGACAUCACCUCCAAGUUGAUCCUCCUCCUGACCAAGAUGGAUUUCAACUUCAGCAAUUUCGUCAUUGAGGUCAGGCAAAGCCUGUUCAUCUCCCUCAUCUACUGGCUUGUUUAGAUCAAGAGCCAUGGAGGUGAUUUUGAAGACUCAUGCAGUGAUUCAGUGGGAGGGAAACUUGCUAUUGAGGUUCAUUUCAAACUUAUAUAGGGUUGUUGUAGUGGUGUGUGCUGAAAUUUGUAAUGCUUGCCGCCAAUGAAGCAAUGCUAAGUUUCAAAAUAUUUGGCGCCCUGGUUGCUGUGUAUUAUUUGUAUAUUGAGCACUUAAUGGCUGCAUCAGAAAUAUUCUUAUCCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
91.87%
ME_num:
MEP:
6.71%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
endosprem
Tau :
0.97
Avg Expression:
5.38
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.65452872950451 | 3.33795024490039e-11 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.99339182739417 | 4.5902287965056e-14 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -9.00421903662994 | 5.39161980174449e-13 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -8.01104836673065 | 5.29757420539483e-10 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -8.2556038096234 | 6.38865372758377e-11 |
6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -8.42203669002073 | 2.51267477964923e-11 |
7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | -1.48840912630663 | 4.19299664815469e-05 |
8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.13619662778332 | 0.000652451816239198 |
9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.26122239652961 | 2.25823005469371e-18 |
10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.65888453043164 | 5.42420955097128e-06 |
11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -8.81637204958328 | 1.32370477309171e-12 |
12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.84777151033981 | 1.38562605375064e-20 |
13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.28957435081947 | 3.18070509335512e-14 |
14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -6.25554456881938 | 2.96446201165825e-18 |
15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN | -1.3019218478061 | 0.000186661795239943 |