Chr:
Chr2
Start:
20631334
End:
20634169
Strand:
-
Ref_name:
LOC107277715
Sequence
(XR_001543053.2):
CAUCCGUUCAUCCGCAUCUCAUCUAAUCUCCUCGCUCCACCACCUGCACUCGCGUCCCUACGACUCUGCGAGCCCGUCCCCGCGCGCUAAUCGCUCCCUCCUCCCAUCCCCGCGCGCUAAUCGCUCUGCCCCCACGCUAUUAUGCGCAGCGCGCCUCCUCAAUCCGCUAAUCGCUCUCUCCUCCCGUCCGCACGCGCUAAUCGCUCUGCCCCCGCACUACUCCUCGCGGCGCGCCUCCUCGCUCUGCGCCUCAUCUCUUGUUCCCGCGGCCGCUGCCGCCGCCGCAGCAUUCCACCACGGCCUGCCCCCGCCGGCGCCGUGUUGGUUCCCGCACGGGAAACCGGUGCCGACAGCCAUCGUCGCCGCGUCAAUCAAGGAAUUAUGGAAGGUUCGAUCUGAUGAUUCUGGACGCGCUUAAGGUCAAAGUAACUCAGUUUCGCUGAAGCUAUGUUGGUUUGCAUCAUUGCAUUGAAAGGCGCAUGUUCUGCUUCUGUUGGUGCUUGAUAUAAUGGCUUUAAAAUUAAGGGAGCUUUGUUCAUUUCCCUCUUGUUGUGCUAUUGAUCGCAUUUUAGUGGACAAAAGUAAGGAUAUAGGUAUGAUUUCUUCUGCCUAGCUGCCUGUCAGUCCACGAGGAGUUUCAUAUGCUUUAUUCCUGCAUGUUGGACUUGUUGCAUCUCCUGCUUCCUUUACUUGGAAACAUGCAUGCUUGAUUCUCUAUAAACACAUAGGGUGGAUCAGUACAAAGCUAACAUAUAUUUAAACUGCAAUUUAGGGGGAUAGAGACUACCAAGGGAUGUAUUAUUUGCCGGGGUUUCAAAAUUCGUGUAAUACUGCUAGCACCUGUAAUAUUUGAUGGCAGUUUGAUGGUUUCUCUACAAUUAGAAAAUAGAAGUUCUCUAAGCAGCUGCCAUUAGAAGGAGAUAAGUUUUUGAACUCAUGAUGCAUACUUAACUUUGUCCCAGAUUUUCUUUUUGAAGUUGUGUAUAAGCACUAAUACUGAGAUGUGCACCUCUGCAUCAGCAUACCAGAGACAUAAGUGAAAUCAUGGAGUCACAAGGUAUUUUGAAAUAUUUGAUUGAGAAGACAUGCUUGAGCAUGAUAAGGUUUAUCUCUAUUUUCCCCCCAAAUGUUGCAUUAUAUCCUCAAAGACAACGGUGUUAUACAUGCAAAUAUUGAUGAUGGUAUUAAUUAAUCAUGGCUUGCAUUUGACAAACAUGAGGCUAAAAACAUGAUGGUAUUAGCAGAUCUUUUGGUCUCAACAAUGGUCAUGAUGUAUAUGACAUUCAUCGUCCGUACAGGCAAGGCAUUAUUACUUUUAUUAGCCUACACUGCGACACUGGAUGUGGUUCAAAUAAACAUUGGUCAUGCUUUUCUUUCACGGAAAAAGUGGCUGUGCAGCAGGAGAUUCACACACCAGUGUCUGACUGGUCUUGCAUUCAUGCUUACAAUUUGAUUUUGAUGGAAAAUUAAAUUUUGCAUUGACCAUUUAUCCAGAUUAUUGUUUCUUGCGGGCCUAGCGAAUAGAUCAUGGAAUUGAGCAAGCUGAAUGAUCCUUCCAUGUGGGAUGAGAAGAGGAUGAAAGUGAAGCUUGGUCUUAGAAGAUGAUUCAGUAGUAGACAACUGUUUAUGACUGAUGAAAGGAAAUUUGUGAUUCACUUAUUUAAACCAAAGAGGCAAAGACGCCAUCAGAAUUCUGUCAUCUGCUCACCAUUAAGAUGGCUUGAUGUUAUCAUGCUCUGAAUCCAAGCAACAUUUUUUUCAGGAUGUGUACAAGUUGAACAGAGAUCAAGUUCUACAUAAUGUUCAGGUCAUAAUUAUUUAUGUAAUAAAUAAUUCAGUCCUACUUCUGUAGCUUGGUUUGGUGCUUCAAAACAAUAUGUUUUACACUGUGUCGCGGCGUUAAUUUGAAUAAAAAUGCAAAAUAUGUUUUGCAUUUUAAUUGCUA
Sequence
(XR_003240504.1):
ACGUCAUUCUCUCUCCGUGAUCACUCGGUUGGAGUUGGUGAAAUGUCUCCCGAUUAGCCCAGUUCGGCUGAUUCGACUGGAAUUAUUUUGUUUAUGUGCAUGAGGAAUUAUGGAAGGUUCGAUCUGAUGAUUCUGGACGCGCUUAAGGUCAAAGUAACUCAGUUUCGCUGAAGCUAUGUUGGUUUGCAUCAUUGCAUUGAAAGGCGCAUGUUCUGCUUCUGUUGGUGCUUGAUAUAAUGGCUUUAAAAUUAAGGGAGCUUUGUUCAUUUCCCUCUUGUUGUGCUAUUGAUCGCAUUUUAGUGGACAAAAGUAAGGAUAUAGGUAUGAUUUCUUCUGCCUAGCUGCCUGUCAGUCCACGAGGAGUUUCAUAUGCUUUAUUCCUGCAUGUUGGACUUGUUGCAUCUCCUGCUUCCUUUACUUGGAAACAUGCAUGCUUGAUUCUCUAUAAACACAUAGGGUGGAUCAGUACAAAGCUAACAUAUAUUUAAACUGCAAUUUAGGGGGAUAGAGACUACCAAGGGAUGUAUUAUUUGCCGGGGUUUCAAAAUUCGUGUAAUACUGCUAGCACCUGUAAUAUUUGAUGGCAGUUUGAUGGUUUCUCUACAAUUAGAAAAUAGAAGUUCUCUAAGCAGCUGCCAUUAGAAGGAGAUAAGUUUUUGAACUCAUGAUGCAUACUUAACUUUGUCCCAGAUUUUCUUUUUGAAGUUGUGUAUAAGCACUAAUACUGAGAUGUGCACCUCUGCAUCAGCAUACCAGAGACAUAAGUGAAAUCAUGGAGUCACAAGGUAUUUUGAAAUAUUUGAUUGAGAAGACAUGCUUGAGCAUGAUAAGGUUUAUCUCUAUUUUCCCCCCAAAUGUUGCAUUAUAUCCUCAAAGACAACGGUGUUAUACAUGCAAAUAUUGAUGAUGGUAUUAAUUAAUCAUGGCUUGCAUUUGACAAACAUGAGGCUAAAAACAUGAUGGUAUUAGCAGAUCUUUUGGUCUCAACAAUGGUCAUGAUGUAUAUGACAUUCAUCGUCCGUACAGGCAAGGCAUUAUUACUUUUAUUAGCCUACACUGCGACACUGGAUGUGGUUCAAAUAAACAUUGGUCAUGCUUUUCUUUCACGGAAAAAGUGGCUGUGCAGCAGGAGAUUCACACACCAGUGUCUGACUGGUCUUGCAUUCAUGCUUACAAUUUGAUUUUGAUGGAAAAUUAAAUUUUGCAUUGACCAUUUAUCCAGAUUAUUGUUUCUUGCGGGCCUAGCGAAUAGAUCAUGGAAUUGAGCAAGCUGAAUGAUCCUUCCAUGUGGGAUGAGAAGAGGAUGAAAGUGAAGCUUGGUCUUAGAAGAUGAUUCAGUAGUAGACAACUGUUUAUGACUGAUGAAAGGAAAUUUGUGAUUCACUUAUUUAAACCAAAGAGGCAAAGACGCCAUCAGAAUUCUGUCAUCUGCUCACCAUUAAGAUGGCUUGAUGUUAUCAUGCUCUGAAUCCAAGCAACAUUUUUUUCAGGAUGUGUACAAGUUGAACAGAGAUCAAGUUCUACAUAAUGUUCAGGUCAUAAUUAUUUAUGUAAUAAAUAAUUCAGUCCUACUUCUGUAGCUUGGUUUGGUGCUUCAAAACAAUAUGUUUUACACUGUGUCGCGGCGUUAAUUUGAAUAAAAAUGCAAAAUAUGUUUUGCAUUUUAAUUGCUA
Sequence
(XR_003240505.1):
UCCGUUCAUCCGCAUCUCAUCUAAUCUCCUCGCUCCACCACCUGCACUCGCGUCCCUACGACUCUGCGAGCCCGUCCCCGCGCGCUAAUCGCUCCCUCCUCCCAUCCCCGCGCGCUAAUCGCUCUGCCCCCACGCUAUUAUGCGCAGCGCGCCUCCUCAAUCCGCUAAUCGCUCUCUCCUCCCGUCCGCACGCGCUAAUCGCUCUGCCCCCGCACUACUCCUCGCGGCGCGCCUCCUCGCUCUGCGCCUCAUCUCUUGUUCCCGCGGCCGCUGCCGCCGCCGCAGCAUUCCACCACGGCCUGCCCCCGCCGGCGCCGUGUUGGUUCCCGCACGGGAAACCGGUGCCGACAGCCAUCGUCGCCGCGUCAAUCAAGAUUUUCUUUUUGAAGUUGUGUAUAAGCACUAAUACUGAGAUGUGCACCUCUGCAUCAGCAUACCAGAGACAUAAGUGAAAUCAUGGAGUCACAAGGUAUUUUGAAAUAUUUGAUUGAGAAGACAUGCUUGAGCAUGAUAAGGUUUAUCUCUAUUUUCCCCCCAAAUGUUGCAUUAUAUCCUCAAAGACAACGGUGUUAUACAUGCAAAUAUUGAUGAUGGUAUUAAUUAAUCAUGGCUUGCAUUUGACAAACAUGAGGCUAAAAACAUGAUGGUAUUAGCAGAUCUUUUGGUCUCAACAAUGGUCAUGAUGUAUAUGACAUUCAUCGUCCGUACAGGCAAGGCAUUAUUACUUUUAUUAGCCUACACUGCGACACUGGAUGUGGUUCAAAUAAACAUUGGUCAUGCUUUUCUUUCACGGAAAAAGUGGCUGUGCAGCAGGAGAUUCACACACCAGUGUCUGACUGGUCUUGCAUUCAUGCUUACAAUUUGAUUUUGAUGGAAAAUUAAAUUUUGCAUUGACCAUUUAUCCAGAUUAUUGUUUCUUGCGGGCCUAGCGAAUAGAUCAUGGAAUUGAGCAAGCUGAAUGAUCCUUCCAUGUGGGAUGAGAAGAGGAUGAAAGUGAAGCUUGGUCUUAGAAGAUGAUUCAGUAGUAGACAACUGUUUAUGACUGAUGAAAGGAAAUUUGUGAUUCACUUAUUUAAACCAAAGAGGCAAAGACGCCAUCAGAAUUCUGUCAUCUGCUCACCAUUAAGAUGGCUUGAUGUUAUCAUGCUCUGAAUCCAAGCAACAUUUUUUUCAGGAUGUGUACAAGUUGAACAGAGAUCAAGUUCUACAUAAUGUUCAGGUCAUAAUUAUUUAUGUAAUAAAUAAUUCAGUCCUACUUCUGUAGCUUGGUUUGGUGCUUCAAAACAAUAUGUUUUACACUGUGUCGCGGCGUUAAUUUGAAUAAAAAUGCAAAAUAUGUUUUGCAUUUUAAUUGCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
46.14%
ME_num:
MEP:
46.75%
HE_num:
HEP:
6.91%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.98
Avg Expression:
64.35
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -3.51172283460684 | 0.00209769472870211 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -2.70633398822611 | 0.0155732936458777 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.70490647062481 | 0.0181776807198606 |
| 4 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -2.52790704117337 | 0.000825307857595009 |
| 5 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -2.46689883870472 | 0.00396880829956095 |
| 6 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 1.62970583005715 | 3.60437412697336e-06 |
| 7 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | 1.20837178519234 | 0.0363693095576654 |
| 8 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 1.11252608190272 | 0.00820976310955612 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.12306614062359 | 0.000409765709546491 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -2.99338400330433 | 0.00182676430790916 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -2.41869642510084 | 0.04700616317814 |
| 12 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.2456502447061 | 0.0114184692148962 |
| 13 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.59977642495778 | 0.00305963056485642 |
| 14 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.82059803978583 | 0.000253109262519207 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.30992432469207 | 0.00635102800546179 |