Chr:
Chr4
Start:
24691270
End:
24692567
Strand:
+
Ref_name:
LOC107277699
Sequence
(XR_001545523.2):
UUCUUCCUCCUCCCUCUCCUUCCUUAUCUCUCUCUUUUCUUAUCCCCUUGGCUAUGGCAGCGACGUGUACUGGAGUGGCGGCGGCGGCGAGCUGGCGAGGGCCGGAGCGGGGCGUCGGCCGAUUCCCCUCCUCUUCCUUGGCUCCCCAAAAUCCCUAAUCCCUGCAUCGCAUUUCGCCUCUUCCCGCGCGCAACCUCCAUAUCGCACGCCGUCGGCCGCCGGCGUCCACUCUCAUCAUAGAUUACCGCCUGCGCGAGCCAUGGACCAUGUCGGGAACUCAGGGUUGGCCGCACUCGAGGGCGGGGGAGCGGGUAAUCCGCCGGAGCCGGCGCCGCACCUGGGUCAUCCUGCAAACGAGGGGAGCACAAGCACCAAGAGAGGAGCGCGUGCUGCUCGGGGAGGAGAUUCGUGGCGUGGUGGCGUGCGAGGGGGUGGAGCUGGUGGAGCGGCACGAGCGGGCGCGGCAGUGGGCGGCGCGGAUGAAAGCGGACGGCAUGGAGCCGGUGGGGUCGUACGGCCAUGCCUUUUUCUUCUGCUGGCACAAGAGGCCGCUUUGCGCCAUCUCUGCGUGGCGGCCGGCGGCGGCGCGCCGCCACCACACUCGGUCGUAGCAUCAUCAUCGUCAUCCAAGAUGCCGCACGGUUGAAUUUGCAACCUGCCCGCCGUUGCCACCGCUCCAGCCCUCGCCCGCUCGCCGCCGCCACAGCUCCAGCACCCAUCAUCCCGCCCGUCACCGCCGCAGCCGAAGGGGAUAAGAAAAGAGAGAGAUAAGGAAGAGAGAGGGAGGAGGUAGAAGGGUCGGAGAGAGAGAGGAUGAUACGUGGGCCCCAAAUGUCUGUGGGUCUCACAAUAUAUAUAUAUAUAUAUAUAUUGUAAAUGACAAAUGGGUCCCAUAUAUAUAUUUUUCAUUCUAAUGCCACGUAAAUGCCACGUAGGAUGAUGACCAGCUCAACAUCGCCACAUCAGCGGCACAUCAGCAAAACCACCCUCCAAAACCGCUGAAUUGUACUGGUUUCAAUAGUUUAGGGAGUCGUUCUAUCCGGUUUUAUGUUGAGGGGUACGAAUUAGAUUCGGCCUACUUUUAAGGGAGUCAAAGUGGACUUUUUACUUUCUUUUUUGAUAAUUGAAGCCCACAGCUUGUGUUCGUUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
39.23%
ME_num:
MEP:
42.07%
HE_num:
HEP:
18.5%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.86
Avg Expression:
11.09
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -2.78959361783969 | 4.88812502757092e-05 |
| 2 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.00468665745867 | 0.0489843232664313 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -3.21598302115185 | 3.90454436877361e-39 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.8871627156558 | 0.000729164370758868 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.55675401526114 | 0.00241953739995988 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.81577599858926 | 3.10971143635192e-06 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.10204983284102 | 0.0100989514407989 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.60679810875662 | 0.0041302033429115 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.56925083974087 | 0.0138263073235656 |
| 10 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.50350638869791 | 0.000579266969730855 |